Table of all cell types (clusters)

Symbol Index Description Neurotransmitter Markers Cells Region Likely location Compartment Taxon Comment
TEGLU1 1 Excitatory neurons, cerebral cortex VGLUT1VGLUT2VGLUT3 Myl4 Cpne4 402 Cortex Cingulate/Retrosplenial area, layer 6 Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for VGLUT3
TEGLU3 2 Excitatory neurons, cerebral cortex VGLUT1 Rprm Rell1 2734 Cortex Cortex pyramidal layer 6 Telencephalon Telencephalon projecting excitatory neurons
TEGLU2 3 Excitatory neurons, cerebral cortex VGLUT1 Cplx3 Nxph3 Hs3st4 274 Cortex Cortex pyramidal layer 6b Telencephalon Telencephalon projecting excitatory neurons
TEGLU20 4 Excitatory neurons, cerebral cortex VGLUT1 Sulf1 Prss12 55 Cortex Cortex pyramidal layer 6 Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for Nitric oxide
TEGLU11 5 Excitatory neurons, cerebral cortex VGLUT1 Igfbp6 C130074G19Rik 1464 Cortex Cortical pyramidal (poor markers) Telencephalon Telencephalon projecting excitatory neurons
TEGLU12 6 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Nr4a2 Col24a1 Oprk1 386 Cortex Lateral cortex layer 6: gustatory, barrel field, auditory Telencephalon Telencephalon projecting excitatory neurons
TEGLU10 7 Excitatory neurons, cerebral cortex VGLUT1 Hs3st2 Vipr1 Pde1a 866 Cortex Cortical pyramidal layer 5 Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for VGLUT2, Nitric oxide
TEGLU9 8 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Dkkl1 Galntl6 202 Cortex Cingulate/Retrosplenial area, layer 5 Telencephalon Telencephalon projecting excitatory neurons
TEGLU8 9 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Krt12 Tcap 3071 Cortex Cortical pyramidal layer 4 Telencephalon Telencephalon projecting excitatory neurons
TEGLU7 10 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 A830009L08Rik Gm12371 Lamp5 2435 Cortex Cortical pyramidal layer 2/3 Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for VGLUT2, Nitric oxide
TEGLU6 11 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Tshz2 Ddit4l 598 Cortex Cingulate/Retrosplenial area, layer 2 Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for Nitric oxide
TEGLU13 12 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Wfs1 RP24-134N2.1 Vwc2l 127 Cortex Subiculum Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for VGLUT2
TEGLU14 13 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Cbln1 Ntsr1 35 Cortex Subiculum Telencephalon Telencephalon projecting excitatory neurons
TEGLU5 14 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Rxfp1 Fermt1 126 Cortex Entorhinal superficial layers Telencephalon Telencephalon projecting excitatory neurons
TEGLU16 15 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 RP23-231J2.1 Dbpht2 Cdkl4 61 Cortex Piriform pyramidal Telencephalon Telencephalon projecting excitatory neurons
TEGLU15 16 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Scube1 Tekt5 186 Cortex Piriform pyramidal Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for Nitric oxide
TEGLU17 17 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Trim54 Slc30a3 Lmo3 784 Cortex Piriform pyramidal Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for Nitric oxide
TEGLU18 18 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Abi3bp 4930426D05Rik Ndst4 Klhl14 Rgs14 657 Cortex Anterior olfactory nucleus, deep layer Telencephalon Telencephalon projecting excitatory neurons
TEGLU19 19 Excitatory neurons, cerebral cortex VGLUT1 Oxtr Bmp3 89 Cortex Anterior olfactory nucleus and ventral striatum Telencephalon Telencephalon projecting excitatory neurons
TEGLU22 20 Excitatory neurons, amygdala VGLUT1VGLUT2 Lypd1 Prss23 Kcng1 958 Amygdala Basolateral amygdala Telencephalon Telencephalon projecting excitatory neurons
TEGLU21 21 Excitatory neurons, hippocampus CA1 VGLUT1 Nov 4833422C13Rik Baiap2l1 104 Hippocampus CA1 (posterior),subiculum,entorhinal Telencephalon Telencephalon projecting excitatory neurons
TEGLU4 22 Excitatory neurons, cerebral cortex VGLUT1VGLUT2 Fezf2 RP24-134N2.1 Kcng1 664 Cortex Cortex pyramidal layer 5, Cingulate/Retrosplenial area (superficial and deep) Telencephalon Telencephalon projecting excitatory neurons Further split possible based on VGLUT2
TEGLU24 23 Excitatory neurons, hippocampus CA1 VGLUT1 Spink8 Lefty1 Neurod6 2037 Hippocampus CA1 Telencephalon Telencephalon projecting excitatory neurons Remaining heterogeneity for Nitric oxide
TEGLU23 24 Excitatory neurons, hippocampus CA3 VGLUT1 Lpl Gm26644 484 Hippocampus CA3 Telencephalon Telencephalon projecting excitatory neurons Further split possible
DGGRC1 25 Granule neuroblasts, dentate gyrus VGLUT1 Bhlhe22 Tmem114 Ntf3 983 Dentate gyrus Dentate gyrus Telencephalon Dentate gyrus granule neurons
DGGRC2 26 Granule neurons, dentate gyrus VGLUT1 C1ql2 Nr3c2 3385 Dentate gyrus Dentate gyrus Telencephalon Dentate gyrus granule neurons
MSN1 27 D1 medium spiny neurons, striatum GABA Drd1 Ido1 Ppp1r1b 869 Striatum dorsal Striatum dorsal Telencephalon Telencephalon projecting inhibitory neurons
MSN2 28 D2 medium spiny neurons, striatum GABA Adora2a Ido1 1094 Striatum dorsal Striatum dorsal Telencephalon Telencephalon projecting inhibitory neurons
MSN3 29 D2 medium spiny neurons, striatum GABA Adora2a Gpr83 Penk 1247 Striatum ventral Striatum ventral Telencephalon Telencephalon projecting inhibitory neurons
MSN4 30 D1 medium spiny neurons, striatum GABA Drd1 Dclk3 Mhrt 1584 Striatum ventral Striatum ventral Telencephalon Telencephalon projecting inhibitory neurons
MSN5 31 Patch D1/D2 neurons, striatum GABA Drd1 Lrpprc 372 Striatum ventral Striatum ventral Telencephalon Telencephalon projecting inhibitory neurons
MSN6 32 Matrix D1 neurons, striatum GABA Tac1 Wnt2 525 Striatum ventral Striatum ventral Telencephalon Telencephalon projecting inhibitory neurons
DETPH 33 Neuroblast-like, habenula VGLUT2 Pde6g Platr17 7 Thalamus Medial habenula Diencephalon Non-glutamatergic neuroblasts Neurotransmitter assigned manually
DGNBL2 34 Granule neuroblasts, dentate gyrus VGLUT1 Igfbpl1 Rerg 1445 Dentate gyrus Dentate gyrus Telencephalon Non-glutamatergic neuroblasts Remaining heterogeneity for VGLUT1
DGNBL1 35 Granule neuroblasts, dentate gyrus VGLUT2 Igfbpl1 Mfap4 159 Dentate gyrus Dentate gyrus Telencephalon Non-glutamatergic neuroblasts
SZNBL 36 Neuronal intermidate progenitor cells GABA 2810417H13Rik Cdca7 971 Striatum dorsal, Striatum ventral, Dentate gyrus Sub ventricular zone, Dentate gyrus Telencephalon Non-glutamatergic neuroblasts
OBNBL3 37 Neuroblasts, olfactory bulb GABA Igfbpl1 Tiam2 2240 Olfactory bulb Olfactory bulb Telencephalon Non-glutamatergic neuroblasts
OBINH1 38 Inhibitory neurons, olfactory bulb GABA Sp9 Ccsap 353 Olfactory bulb Main and accessory olfactory bulb granular layer Telencephalon Olfactory inhibitory neurons
OBINH5 39 Inhibitory neurons, olfactory nulb GABA Scgn Cpne6 281 Olfactory bulb Olfactory bulb Telencephalon Olfactory inhibitory neurons Remaining heterogeneity for Nitric oxide
OBINH2 40 Inner horizontal cell, olfactory bulb GABA Shisa8 Fam184a 1800 Olfactory bulb Olfactory bulb, mitral cell layer Telencephalon Olfactory inhibitory neurons
OBINH3 41 Inhibitory neurons, olfactory bulb GABA Gpsm1 Col6a1 786 Olfactory bulb Accessory olfactory bulb granular layer Telencephalon Olfactory inhibitory neurons
OBINH4 42 Inhibitory neurons, olfactory bulb GABA Prok2 Trdn 465 Olfactory bulb Olfactory bulb, inner granular layer Telencephalon Olfactory inhibitory neurons
OBNBL4 43 Inhibitory neurons, olfactory bulb GABA Nppa Nccrp1 208 Olfactory bulb Main olfactory bulb, glomerular layer Telencephalon Olfactory inhibitory neurons
OBNBL5 44 Inhibitory neurons, olfactory bulb GABA Nppa Dlx5 871 Olfactory bulb Main olfactory bulb, glomerular layer and Accessory olfactory bulb, granular layer Telencephalon Olfactory inhibitory neurons
OBDOP 45 Dopaminergic periglomerular interneuron, olfactory bulb GABADop Trh Th Pax6 371 Olfactory bulb Olfactory bulb, periglomerular layer Telencephalon Olfactory inhibitory neurons
OBINH6 46 External plexiform layer interneuron, olfactory bulb GABA Crh Tcap Pgam2 56 Olfactory bulb Olfactory bulb, outer plexiform layer Telencephalon Olfactory inhibitory neurons
DEINH1 47 Inhibitory neurons, thalamus GABA Six3 St8sia4 Esrrg 339 Thalamus Reticular nucleus of the thalamus (Sst low) Diencephalon Telencephalon inhibitory interneurons Trinarization detects VGLUT2
DEINH2 48 Inhibitory neurons, thalamus GABA Six3 Gm2115 Esrrg 167 Thalamus Reticular nucleus of the thalamus Diencephalon Telencephalon inhibitory interneurons
TEINH17 49 Axo-axonic, cortex/hippocampus GABA Pthlh Cox6a2 675 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons Further split possible
TEINH18 50 Basket and bistratified cells, cortex/hippocampus GABA Rbp4 Cox6a2 Cort 547 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons
TEINH19 51 Hippocamposeptal projection, cortex/hippocampus GABA Sst Ccna1 1040 Hippocampus,Cortex Hippocampus (so),Cortex Telencephalon Telencephalon inhibitory interneurons
TEINH21 52 Sleep-active, long-range projection interneurons, cortex/hippocampus GABA Crhbp Tacr1 Chodl 385 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons Further split possible based on Acetylcholine
TEINH16 53 Ivy and MGE-derived neurogliaform cells, cortex/hippocampus GABA Lhx6 Pde11a 644 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons
TEINH15 54 CGE-derived neurogliaform cells, cortex/hippocampus GABA Npy Ptchd2 1069 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons
TEINH14 55 CGE-derived neurogliaform cells Cxcl14+, cortex/hippocampus GABA Cplx3 Teddm3 422 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons Remaining heterogeneity for Nitric oxide
TEINH20 56 Inhibitory interneurons, hippocampus GABA Cyp26b1 Stk32b Chrm2 Tcerg1l Nell1 139 Hippocampus Hippocampus (sr/slm) Telencephalon Telencephalon inhibitory interneurons
TEINH13 57 Trilaminar cells, hippocampus VGLUT3GABA Ibsp Cnr1 163 Hippocampus Hippocampus Telencephalon Telencephalon inhibitory interneurons Remaining heterogeneity for VGLUT3
TEINH12 58 Non-border Cck interneurons, cortex/hippocampus VGLUT3GABA Krt73 Stk32b 5330429C05Rik 280 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons Remaining heterogeneity for VGLUT3
TEINH9 59 Non-border Cck interneurons, hippocampus GABA Vip Fam181b Gm8797 162 Hippocampus Hippocampus Telencephalon Telencephalon inhibitory interneurons
TEINH10 60 R-LM border Cck interneurons, cortex/hippocampus VGLUT3GABA Yjefn3 Hdhd3 Npas1 581 Hippocampus,Cortex Hippocampus (sr/slm),Cortex Telencephalon Telencephalon inhibitory interneurons Remaining heterogeneity for VGLUT3, Nitric oxide
TEINH11 61 R-LM border Cck interneurons, cortex/hippocampus VGLUT3GABA Col19a1 Slc17a8 660 Hippocampus,Cortex Hippocampus (sr/slm),Cortex Telencephalon Telencephalon inhibitory interneurons Remaining heterogeneity for VGLUT3
TEINH4 62 Interneuron-selective interneurons, cortex/hippocampus GABA Vip Gm17750 Cxcl14 645 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons
TEINH5 63 Interneuron-selective interneurons, cortex/hippocampus GABA Vip Tiam1 449 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons
TEINH8 64 Interneuron-selective interneurons, hippocampus GABA Vip Ccne1 Myl1 57 Hippocampus Hippocampus Telencephalon Telencephalon inhibitory interneurons
TEINH7 65 Interneuron-selective interneurons, hippocampus GABA Htr3a Mns1 Npas1 68 Hippocampus Hippocampus Telencephalon Telencephalon inhibitory interneurons
TEINH6 66 Interneuron-selective interneurons, cortex/hippocampus GABA Tac2 Epha7 145 Hippocampus,Cortex Hippocampus,Cortex Telencephalon Telencephalon inhibitory interneurons Remaining heterogeneity for Nitric oxide
TECHO 67 Cholinergic interneurons, telencephalon VGLUT3GABAACh Slc5a7 Slc17a8 Chat 121 Striatum dorsal, Striatum ventral,Amygdala Striatum,Amygdala Telencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for GABA, Nitric oxide
DECHO1 68 Cholinergic neurons, septal nucleus, Meissnert and diagonal band VGLUT3GABAACh Lhx8 Cox6a2 Slc18a3 114 Hypothalamus Medial septal nuclues, diagonal band nucleus and nucleus basalis of Meissnert Diencephalon Cholinergic and monoaminergic neurons Further split possible based on GABA, VGLUT3
HBCHO4 69 Afferent nuclei of cranial nerves III-V VGLUT2ACh Slc5a7 Irx4 Slc18a3 52 Pons Afferent nuclei of cranial nerves III-V Rhombencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for VGLUT2
HBCHO3 70 Afferent nuclei of cranial nerves VI-XII AChDopNor Slc5a7 Tbx20 Adcyap1 AW551984 Tmem26 72 Medulla Afferent nuclei of cranial nerves VI-XII Rhombencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for Dopamine, Noradrenaline
HBADR 71 Adrenergic cell groups of the medulla VGLUT2VGLUT3Adr Npff Tfap2b Chodl AW551984 Pnmt 40 Medulla Nucleus of the solitary tract, adrenergic cell groups C1-3 Rhombencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for Acetylcholine
HBNOR 72 Noradrenergic neurons of the medulla VGLUT2Nor Afp Prlh Phox2b Casr Gch1 23 Medulla A1-2 noradrenergic cell groups Rhombencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for Serotonin
HYPEP7 73 Pmch neurons, hypothalamus VGLUT2 Pmch Nkx2-1 Otx1 13 Hypothalamus Lateral hypothalamic area Diencephalon Cholinergic and monoaminergic neurons
HYPEP6 74 Orexin-producing neurons, hypothalamus VGLUT2 Hcrt Pdyn 32 Hypothalamus Dorsomedial nucleus of the hypothalamus Diencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for Dopamine
MEGLU14 75 Glutamatergic projection neurons of the raphe nucleus VGLUT3 Cartpt Ucn Chodl 47 Midbrain dorsal Dorsal raphe nucleus Mesencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for Acetylcholine
MBDOP1 76 Dopaminergic neurons, periaqueductal grey VGLUT2Dop En1 Npw Ret 57 Midbrain ventral Ventral midbrain, periaqueductal grey Mesencephalon Cholinergic and monoaminergic neurons
MBDOP2 77 Dopaminergic neurons, ventral midbrain (SNc, VTA) VGLUT2Dop Slc6a3 Chrna6 63 Midbrain ventral Ventral tegmental area and subtantia nigra Mesencephalon Cholinergic and monoaminergic neurons
HBSER1 78 Serotonergic neurons, hindbrain VGLUT3Ser Slc6a4 Wfdc12 Slc18a2 105 Pons Ventral midbrain/isthmic dorsal raphe (B7), caudal linear nucleus (B8), medial lemniscus (B9), isthmic periaqueductal grey (B4?) Rhombencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for Nitric oxide
HBSER2 79 Serotonergic neurons, hindbrain VGLUT3Ser Tph2 Slc17a8 Maob 109 Pons Nucleus raphe Pons (B5, B6) Rhombencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for Nitric oxide
HBSER3 80 Serotonergic neurons, hindbrain VGLUT3GABASer Gchfr Il1r1 Slc18a2 87 Pons Ventral midbrain, rostral pons Rhombencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for VGLUT3
HBSER5 81 Serotonergic neurons, hindbrain GABASer Tph2 5031425F14Rik Slc18a2 64 Pons Nucleus raphe pons (pallidus, oscurus, magnus, B1-3) Rhombencephalon Cholinergic and monoaminergic neurons
HBSER4 82 Serotonergic neurons, hindbrain VGLUT3Ser Trh Pgr15l Slc18a2 72 Medulla Nucleus raphe medulla (pallidus, oscurus, magnus, B1-3) Rhombencephalon Cholinergic and monoaminergic neurons Remaining heterogeneity for Acetylcholine
TEINH3 83 Inhibitory neurons, telencephalon GABA Ecel1 Tmem215 Peg10 145 Pallidum Bed nuclei of the stria terminalis posterior division Telencephalon Peptidergic neurons
TEINH2 84 Inhibitory neurons, septal nucleus GABA A230065H16Rik Zic1 1339 Striatum dorsal, Striatum ventral Septal nucleus Telencephalon Peptidergic neurons
DEINH4 85 Inhibitory neurons, thalamus GABA Lhx8 Rmst Dgkk 57 Thalamus Paraventricular nucleus of the thalamus (best fit) but do not fit with Nmu expression Diencephalon Peptidergic neurons
DEINH5 86 Peptidergic neurons, hypothalamus GABA Nts Dlk1 308 Hypothalamus Medial preoptic nucleus, Bed nuclei of the stria terminalis anterior division Diencephalon Peptidergic neurons
HYPEP3 87 Peptidergic neurons, hypothalamus VGLUT2 Fezf1 Baiap3 152 Hypothalamus Ventromedial hypothalamic nucleus Diencephalon Peptidergic neurons Trinarization detects GABA
HYPEP1 88 Peptidergic neurons, hypothalamus VGLUT2 Trh Ngb Peg10 191 Hypothalamus Lateral hypothalamic area Diencephalon Peptidergic neurons Remaining heterogeneity for Nitric oxide
HYPEP2 89 Peptidergic neurons, hypothalamus VGLUT2 Ucn3 Baiap3 Pkib 43 Hypothalamus Paraventricular hypothalamic nucleus Diencephalon Peptidergic neurons Remaining heterogeneity for VGLUT2
MEINH14 90 Inhibitory neurons, midbrain GABA Rln3 Gpx3 21 Midbrain ventral Midbrain reticular nucleus, Darkschewitz nucleus, Mesencephalon Peptidergic neurons
DEINH6 91 Peptidergic neurons, hypothalamus GABA Otp Cited1 12 Hypothalamus Arcuate hypothalamic nucleus (probably, Npy, Agrp cells) Diencephalon Peptidergic neurons
DEINH8 92 Inhibitory neurons, hypothalamus GABA Six6 Rgs16 Pkib 120 Hypothalamus Suprachiasmatic nucleus, Medial preoptic nucleus Diencephalon Peptidergic neurons
DEINH7 93 Inhibitory neurons, hypothalamus GABA Avp Rgs16 182 Hypothalamus Suprachiasmatic nucleus, Medial preoptic nucleus Diencephalon Peptidergic neurons
HYPEP5 94 Vasopressin-producing cells, hypothalamus VGLUT2 Avp H2-DMb2 Sim1 173 Hypothalamus Paraventricular hypothalamic nucleus magnocellular division and/or Diagonal band nucleus Diencephalon Peptidergic neurons
HYPEP4 95 Oxytocin-producing cells, hypothalamus VGLUT2 Oxt Fam183b Sim1 98 Hypothalamus Dorsomedial nucleus of the hypothalamus. magnocellular neurosecretory cells. Diencephalon Peptidergic neurons
HYPEP8 96 Peptidergic neurons, hypothalamus VGLUT2 Gnrh1 Gng8 15 Hypothalamus Anteroventral periventricular continue along midline to Medial septal nucleus Diencephalon Peptidergic neurons
SCINH11 97 Central canal neurons, spinal cord GABA Pkd2l1 Pdzk1ip1 Pkd1l2 50 Spinal cord Spinal Cord central canal Spinal cord Peptidergic neurons
SCINH10 98 Inhibitory neurons, spinal cord GABAGly Hoxb9 Tacr3 Pnoc 65 Spinal cord Dorsal horn, lamina 2-6 Spinal cord Spinal cord inhibitory neurons Remaining heterogeneity for Glycine
SCINH9 99 Inhibitory neurons, spinal cord GABAGly Serpinb1b Hoxb5os Skor1 84 Spinal cord Dorsal horn, lamina 2-6 Spinal cord Spinal cord inhibitory neurons Remaining heterogeneity for Nitric oxide
SCINH8 100 Inhibitory neurons, spinal cord GABA Serpinb1b Rspo3 Hoxb6 B3gat2 Fam159b 87 Spinal cord Dorsal horn, lamina 2-6 Spinal cord Spinal cord inhibitory neurons
SCINH7 101 Inhibitory neurons, spinal cord GABA Krt17 Nrl Hoxb6 71 Spinal cord Dorsal horn, lamina 2-6 Spinal cord Spinal cord inhibitory neurons
SCINH6 102 Inhibitory neurons, spinal cord GABA Hoxb8 Pcsk5 Hoxb6 87 Spinal cord Dorsal horn, lamina 2-4 Spinal cord Spinal cord inhibitory neurons
SCINH5 103 Inhibitory neurons, spinal cord GABAGly Serpinb1b Gbx1 Hoxb6 44 Spinal cord Dorsal horn, lamina 2-6 Spinal cord Spinal cord inhibitory neurons
SCINH4 104 Inhibitory neurons, spinal cord GABA Hoxb8 Kcnmb2 Hoxb6 37 Spinal cord Dorsal horn, lamina 3-6 Spinal cord Spinal cord inhibitory neurons
SCINH3 105 Inhibitory neurons, spinal cord GABAGly Serpinb1b Pax8 Glra1 66 Spinal cord Dorsal horn, lamina 2-6 Spinal cord Spinal cord inhibitory neurons
HBINH9 106 Inhibitory neurons, hindbrain GABAGly Pax2 Nyap2 Hoxb6 98 Medulla Paragigantocellular reticular nucleus Rhombencephalon Spinal cord inhibitory neurons Remaining heterogeneity for Nitric oxide
SCINH2 107 Inhibitory neurons, spinal cord GABAGly Hoxb8 Kcnk3 Glra1 117 Spinal cord Dorsal horn, lamina 2-6 Spinal cord Spinal cord inhibitory neurons Trinarization detects VGLUT2
SCGLU1 108 Excitatory neurons, spinal cord VGLUT2 Hoxc10 Mab21l2 Glra1 52 Spinal cord Dorsal horn lamina 4-6 Spinal cord Spinal cord excitatory neurons
SCGLU2 109 Excitatory neurons, spinal cord VGLUT2 Hoxb8 Card10 Hoxa7 133 Spinal cord Dorsal horn lamina 4-6 Spinal cord Spinal cord excitatory neurons
SCGLU3 110 Excitatory neurons, spinal cord VGLUT2 Hoxc8 RP24-236C17.2 Hoxc9 62 Spinal cord Dorsal horn lamina 1-3 Spinal cord Spinal cord excitatory neurons
SCGLU4 111 Excitatory neurons, spinal cord VGLUT2 Hoxb8 Vsig8 Hoxa9 180 Spinal cord Dorsal horn lamina 2-3 Spinal cord Spinal cord excitatory neurons
SCGLU5 112 Excitatory neurons, spinal cord VGLUT2 Nmu Hoxb7 Hoxb6 252 Spinal cord Dorsal horn, lamina 2-3 Spinal cord Spinal cord excitatory neurons
SCGLU6 113 Excitatory neurons, spinal cord VGLUT2 Grp Mrap2 Hoxa7 140 Spinal cord Dorsal horn lamina 1-2 Spinal cord Spinal cord excitatory neurons
SCGLU7 114 Excitatory neurons, spinal cord VGLUT2 Ucn3 Nppc Glra1 30 Spinal cord Dorsal horn lamina 2-5 Spinal cord Spinal cord excitatory neurons
SCGLU8 115 Excitatory neurons, spinal cord VGLUT2 Pcp2 Lbx1 Hoxb6 15 Spinal cord Dorsal horn lamina 2-5 Spinal cord Spinal cord excitatory neurons Neurotransmitter assigned manually
SCGLU9 116 Excitatory neurons, spinal cord VGLUT2 Nts Pde11a Prrxl1 154 Spinal cord Dorsal horn lamina 3 Spinal cord Spinal cord excitatory neurons
SCGLU10 117 Excitatory neurons, spinal cord VGLUT2 Nts Pla2g5 Glra1 68 Spinal cord Dorsal horn lamina 2-4 Spinal cord Spinal cord excitatory neurons
HBGLU10 118 Excitatory neurons, hindbrain VGLUT2 Ebf2 Zmym1 Ebf1 80 Medulla Nucleus of the solitary tract Rhombencephalon Spinal cord excitatory neurons
HBGLU3 119 Excitatory neurons, hindbrain VGLUT2 Gpr101 Hoxc4 Ebf1 107 Medulla Nucleus of the solitary tract Rhombencephalon Di- and mesencephalon excitatory neurons Remaining heterogeneity for Nitric oxide
HBGLU2 120 Excitatory neurons, hindbrain VGLUT2 Slc17a6 Prlr Gprasp2 200 Medulla Nucleus of the solitary tract Rhombencephalon Di- and mesencephalon excitatory neurons
MEGLU2 121 Excitatory neurons, midbrain VGLUT2 Tac1 Trim66 Hap1 336 Midbrain dorsal Periaqueductal grey Mesencephalon Di- and mesencephalon excitatory neurons
MEGLU3 122 Excitatory neurons, midbrain VGLUT2 Cartpt Pou4f2 Foxp2 137 Midbrain dorsal Periaqueductal grey Mesencephalon Di- and mesencephalon excitatory neurons
DEGLU5 123 Excitatory neurons, midbrain VGLUT2 Tcf7l2 Cabp7 Htr2c 426 Midbrain dorsal Anterior pretectal nucleus Mesencephalon Di- and mesencephalon excitatory neurons
MEGLU1 124 Excitatory neurons, midbrain VGLUT2 Syt2 Oscp1 Vamp1 263 Midbrain dorsal Superior colliculus, red nucleus Mesencephalon Di- and mesencephalon excitatory neurons Remaining heterogeneity for Nitric oxide
MEGLU7 125 Excitatory neurons, midbrain VGLUT2 Tcf7l2 Coro6 Tpbg 138 Midbrain dorsal Inferior colliculus Mesencephalon Di- and mesencephalon excitatory neurons
MEGLU8 126 Excitatory neurons, midbrain VGLUT2 Lhx9 Tfap2d Adcyap1 305 Midbrain dorsal Inferior colliculus Mesencephalon Di- and mesencephalon excitatory neurons
MEGLU9 127 Excitatory neurons, midbrain VGLUT2 Tcf7l2 Zfp239 Cbln2 243 Midbrain dorsal Mantle of inferior colliculus Mesencephalon Di- and mesencephalon excitatory neurons Further split possible based on Th
MEGLU10 128 Excitatory neurons, midbrain VGLUT2 En1 Ngb Ndst4 419 Midbrain dorsal Inferior colliculus Mesencephalon Di- and mesencephalon excitatory neurons
MEGLU11 129 Excitatory neurons, midbrain VGLUT2 En1 Sema3f Ndst4 Inadl Plcxd2 249 Midbrain dorsal Inferior colliculus Mesencephalon Di- and mesencephalon excitatory neurons
MBCHO1 130 Cholinergic neurons, midbrain red nucleus VGLUT2ACh Evx1os Gm2694 Drd5 62 Midbrain ventral Red nucleus Mesencephalon Di- and mesencephalon excitatory neurons
MEGLU6 131 Excitatory neurons, midbrain VGLUT2 Npnt Gpc3 Tmem132c Kcnd3 Tpd52l1 143 Midbrain dorsal Superior colliculus, sensory related, deep layer Mesencephalon Di- and mesencephalon excitatory neurons
MEGLU5 132 Excitatory neurons, midbrain VGLUT2 Barhl1 Myh8 Rorb Col25a1 Cdh7 281 Midbrain dorsal Superior colliculus, sensory related Mesencephalon Di- and mesencephalon excitatory neurons
MEGLU4 133 Excitatory neurons, midbrain VGLUT2 Barhl1 Kcnab1 Sorcs1 136 Midbrain dorsal Superior colliculus, sensory related Mesencephalon Di- and mesencephalon excitatory neurons
CR 134 Cajal-Retzius cells, hippocampus VGLUT1VGLUT2 Ndnf Nhlh2 222 Dentate gyrus Dentate gyrus molecular layer Telencephalon Di- and mesencephalon excitatory neurons
DECHO2 135 Cholinergic neurons, habenula VGLUT1VGLUT2ACh Gm5741 Gng8 Lrrc55 207 Thalamus Habenula Diencephalon Di- and mesencephalon excitatory neurons Further split possible based on Acetylcholine, Th
HBGLU1 136 Excitatory neurons, hindbrain VGLUT2VGLUT3 Pou4f1 Htr5b Rims4 52 Medulla Inferior olivary complex Rhombencephalon Di- and mesencephalon excitatory neurons
DEGLU1 137 Excitatory neurons, thalamus VGLUT1VGLUT2 Synpo2 Adamts15 Prkcd 1058 Thalamus Posterior thalamus Diencephalon Di- and mesencephalon excitatory neurons
DEGLU2 138 Excitatory neurons, hypothalamus VGLUT1VGLUT2 Shox2 Aldh3b2 Ramp3 257 Hypothalamus Subparafascicular nucleus Diencephalon Di- and mesencephalon excitatory neurons Further split possible based on VGLUT1
DEGLU3 139 Excitatory neurons, thalamus VGLUT2 Slc17a6 Gbx2 Foxp2 1113 Thalamus Paraventricular nucleus of the thalamus Diencephalon Di- and mesencephalon excitatory neurons
DEGLU4 140 Excitatory neurons, thalamus VGLUT1VGLUT2 Cbln1 Megf11 Cbln4 101 Thalamus Parafascicular nucleus Diencephalon Di- and mesencephalon excitatory neurons
MEINH12 141 Inhibitory neurons, midbrain GABA Lhx1os Galnt14 49 Midbrain dorsal Superior colliculus Mesencephalon Di- and mesencephalon inhibitory neurons
MEINH11 142 Inhibitory neurons, midbrain GABA Sox14 Dmbx1 101 Midbrain dorsal Superior colliculus superficial gray layer Mesencephalon Di- and mesencephalon inhibitory neurons
MEINH10 143 Inhibitory neurons, midbrain GABA Otx2 Gabrr2 Cdhr1 792 Midbrain dorsal Superior colliculus superficial grey layer Mesencephalon Di- and mesencephalon inhibitory neurons
MEINH9 144 Inhibitory neurons, midbrain GABA Otx2 Rd3l Cbln4 400 Midbrain dorsal Dorsal midbrain scattered Mesencephalon Di- and mesencephalon inhibitory neurons Remaining heterogeneity for Nitric oxide
MEINH5 145 Inhibitory neurons, midbrain GABA Tnnt1 Tnni3 Gata3 154 Midbrain dorsal Superior colliculus (sparse) Mesencephalon Di- and mesencephalon inhibitory neurons
MEINH6 146 Inhibitory neurons, midbrain GABA Fibcd1 Mgarp Lmo1 Vwc2 Npffr1 47 Midbrain dorsal Superior colliculus Mesencephalon Di- and mesencephalon inhibitory neurons Trinarization detects VGLUT2
MEINH7 147 Inhibitory neurons, midbrain GABA Pax7 Tfap2b Cdhr1 Rnf152 Zfhx4 69 Midbrain dorsal Superior colliculus Mesencephalon Di- and mesencephalon inhibitory neurons
MEINH4 148 Inhibitory neurons, midbrain GABA Lhx1os Emx2 162 Midbrain dorsal Anterior pretectal nucleus Mesencephalon Di- and mesencephalon inhibitory neurons
MEINH3 149 Inhibitory neurons, midbrain GABA Tal1 Trim66 Gata3 258 Midbrain dorsal Dorsal midbrain, medial geniculate nucleus, anteroventral midbrain Mesencephalon Di- and mesencephalon inhibitory neurons
HBINH5 150 Inhibitory neurons, hindbrain GABAGly Slc6a5 Pgr Glra1 480 Medulla Gigantocellular reticular nucleus Rhombencephalon Di- and mesencephalon inhibitory neurons
MEINH2 151 Inhibitory neurons, midbrain GABA Syt2 Nrtn Smim17 461 Midbrain dorsal,Midbrain ventral Midbrain Mesencephalon Di- and mesencephalon inhibitory neurons
DEINH3 152 Inhibitory neurons, hypothalamus GABA Syt2 Nfatc2 Smim17 323 Hypothalamus Subthalamic nucleus Diencephalon Di- and mesencephalon inhibitory neurons
TEINH1 153 Inhibitory neurons, pallidum GABA Lhx8 Gbx1 Elfn1 576 Pallidum Medial septal nucleus and Magnocellular nucleus Telencephalon Di- and mesencephalon inhibitory neurons
MEINH13 154 Inhibitory neurons, midbrain GABA Pax5 Gabrq 70 Midbrain ventral Ventral/caudal midbrain (SN, VTA, reticular nucleus) Mesencephalon Di- and mesencephalon inhibitory neurons
MEINH8 155 Inhibitory neurons, midbrain GABA Pax7 Gm27199 71 Midbrain dorsal Superior colliculus superficial grey layer; Erdinger-Westphal nucleus, periaqueductal grey, nucleus of the optic tract Mesencephalon Di- and mesencephalon inhibitory neurons Remaining heterogeneity for Nitric oxide
HBINH1 156 Inhibitory neurons, hindbrain GABA Chrna2 Nos1 13 Pons Pons, interpeduncular and tegmental nuclei in rh1 Rhombencephalon Di- and mesencephalon inhibitory neurons
HBINH3 157 Inhibitory neurons, hindbrain GABAGly Hoxb5 Nhlh2 127 Medulla Paragigantocellular reticular nucleus Rhombencephalon Hindbrain neurons Remaining heterogeneity for Nitric oxide
HBINH4 158 Inhibitory neurons, hindbrain GABAGly Ebf3 Sema3a Esrrg 75 Medulla Paragigantocellular reticular nucleus Rhombencephalon Hindbrain neurons Remaining heterogeneity for Nitric oxide
HBINH6 159 Inhibitory neurons, hindbrain GABAGly Nxph4 Tmem72 Gpr139 62 Pons Koelliker-Fuse subnucleus Rhombencephalon Hindbrain neurons Further split possible, Remaining heterogeneity for Nitric oxide, Trinarization detects Acetylcholine
HBINH2 160 Inhibitory neurons, hindbrain GABAGlyACh Irs4 Tfap2b Cbln4 22 Medulla Nucleus of the solitary tract Rhombencephalon Hindbrain neurons Remaining heterogeneity for Acetylcholine
HBCHO1 161 Cholinergic neurons, hindbrain VGLUT1VGLUT2ACh St8sia6 Adgrg2 Mdga1 10 Medulla Medulla (several nuclei) Rhombencephalon Hindbrain neurons
HBCHO2 162 Cholinergic neurons, hindbrain VGLUT1VGLUT2ACh Gpx2 Defa24 AF529169 22 Pons Medial pontine nuclei, reticulotegmental nuclei Rhombencephalon Hindbrain neurons Trinarization detects Serotonin
HBGLU4 163 Excitatory neurons, hindbrain VGLUT1VGLUT2 Gpx2 Olfm2 Klhl1 7 Medulla Medial vestibular nucleus and Nucleus prepositus Rhombencephalon Hindbrain neurons
HBGLU5 164 Excitatory neurons, hindbrain VGLUT1VGLUT2 Irx2 Ly6d Fcmr 130 Pons Pontine reticular nucleus, caudal part Rhombencephalon Hindbrain neurons
HBGLU6 165 Excitatory neurons, hindbrain VGLUT1VGLUT2 Irx2 Hoxc5 Esrrg 252 Pons Pontine gray Rhombencephalon Hindbrain neurons Further split possible
HBGLU7 166 Excitatory neurons, hindbrain VGLUT1VGLUT2 Irx2 Mreg Esrrg 275 Pons Tegmental reticular nucleus Rhombencephalon Hindbrain neurons
HBGLU8 167 Excitatory neurons, hindbrain VGLUT1VGLUT2 Spp1 Cyp2s1 Nefh 11 Pons Tegmental reticular nucleus Rhombencephalon Hindbrain neurons
HBGLU9 168 Excitatory neurons, hindbrain VGLUT1VGLUT2 Kcng4 Htr1b Glra1 97 Medulla Spinal nucleus of the trigeminal Rhombencephalon Hindbrain neurons Further split possible, Remaining heterogeneity for Nitric oxide
HBINH7 169 Inhibitory neurons, hindbrain GABAGly Slc6a5 Stac2 Vamp1 25 Pons Superior olivary complex Rhombencephalon Hindbrain neurons Further split possible based on Nitric oxide
HBINH8 170 Inhibitory neurons, hindbrain GABAGly Slc6a5 Lingo4 Sall3 11 Medulla Spinal nucleus of the trigeminal Rhombencephalon Hindbrain neurons
SCINH1 171 Inhibitory neurons, spinal cord GABAGly Crabp1 Tnfrsf13c Sall3 18 Spinal cord Dorsal horn, lamina 2-3,6 Spinal cord Hindbrain neurons
CBINH2 172 Granular layer interneurons, cerebellum GABAGly Slc6a5 Grm2 Lgi2 17 Cerebellum Cerebellum, granular layer Rhombencephalon Cerebellum neurons
MEINH1 173 Inhibitory neurons, midbrain GABA Pvalb Il22 Kit 43 Midbrain ventral VTA, Substantia nigra, central nucleus raphe Mesencephalon Cerebellum neurons
CBINH1 174 Molecular layer interneurons, cerebellum GABA Pvalb Cnpy1 662 Cerebellum Cerebellum, molecular layer Rhombencephalon Cerebellum neurons
CBPC 175 Purkinje cells VGLUT1GABA Pcp2 Slc1a6 Car8 84 Cerebellum Cerebellum, border of granular layer and molecular layer Rhombencephalon Cerebellum neurons Trinarization detects VGLUT1
CBGRC 176 Granule neurons, cerebellum VGLUT1 Cbln3 Gabra6 4193 Cerebellum Cerebellum Rhombencephalon Cerebellum neurons
CBNBL2 177 Neuroblasts, cerebellum VGLUT1 Neurod1 Mia 293 Cerebellum Cerabellum Rhombencephalon Cerebellum neurons
CBNBL1 178 Neuroblasts, cerebellum VGLUT1VGLUT2 Sln Lmx1a 163 Pons,Medullae,Cerebellum Hindbrain (pons, medulla cerabellum) Rhombencephalon Glutamatergic neuroblasts
SEPNBL 179 Neuroblasts, septum VGLUT1VGLUT2 Sln Sost Ctxn3 117 Pallidum Triangular nucleus of septum Telencephalon Glutamatergic neuroblasts
OBNBL1 180 Neuroblasts, olfactory VGLUT1VGLUT2 Doc2g Ms4a15 Cdhr1 139 Olfactory bulb Main olfactory bulb mitral layer, Main olfactory bulb outer plexiform layer Telencephalon Glutamatergic neuroblasts
OBNBL2 181 Neuroblasts, olfactory bulb VGLUT1VGLUT2 Ly6g6e Eomes 225 Olfactory bulb Main olfactory bulb mitral layer, Main olfactory bulb outer plexiform layer Telencephalon Glutamatergic neuroblasts Remaining heterogeneity for VGLUT1
ENT1 182 Nitrergic enteric neurons ACh Gal Moxd1 Tmem255b 14 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons
ENT2 183 Nitrergic enteric neurons Cartpt Bglap Ass1 107 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons
ENT3 184 Nitrergic enteric neurons Cox8b Anxa11 Ass1 155 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons
ENT4 185 Cholinergic enteric neurons ACh Hoxa5 Myc Dmkn 155 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons
ENT5 186 Cholinergic enteric neurons ACh Hoxa5 Hspb7 Dmkn 259 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons
ENT6 187 Cholinergic enteric neurons ACh Htr2b Tm4sf4 mt-Nd3 118 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons
ENT7 188 Cholinergic enteric neurons, VGLUT2 VGLUT2ACh Cckar Nxph2 Gna14 31 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons Remaining heterogeneity for Dopamine
ENT8 189 Cholinergic enteric neurons, VGLUT2 VGLUT2ACh Ucn3 Phox2a Myl1 AW551984 Etaa1os 97 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons
ENT9 190 Cholinergic enteric neurons ACh P2rx2 Krt19 Myl1 169 Enteric nervous system Myenteric plexus of small intestine Neural crest Enteric neurons
SYNOR1 191 Noradrenergic erector muscle neurons Nor Dbh Procr Ntrk1 97 Sympathetic ganglion Sympathetic ganglion Neural crest Sympathetic noradrenergic neurons
SYNOR2 192 Noradrenergic neurons, sympathetic Nor Dbh Pi16 Hand1 62 Sympathetic ganglion Sympathetic ganglion Neural crest Sympathetic noradrenergic neurons
SYNOR3 193 Noradrenergic neurons, sympathetic Nor Slc6a2 Arhgap36 Sctr 409 Sympathetic ganglion Sympathetic ganglion Neural crest Sympathetic noradrenergic neurons
SYNOR4 194 Noradrenergic erector muscle neurons Nor Slc6a2 Fbp2 Ntrk1 182 Sympathetic ganglion Sympathetic ganglion Neural crest Sympathetic noradrenergic neurons
SYNOR5 195 Noradrenergic erector muscle neurons Nor Areg Ltk Omp 46 Sympathetic ganglion Sympathetic ganglion Neural crest Sympathetic noradrenergic neurons
SYCHO2 196 Cholinergic neurons, sympathetic AChNor Areg C1qtnf7 Slc18a3 75 Sympathetic ganglion Sympathetic ganglion Neural crest Sympathetic cholinergic neurons
SYCHO1 197 Cholinergic neurons, sympathetic AChNor Vip Cited1 Slc18a3 15 Sympathetic ganglion Sympathetic ganglion Neural crest Sympathetic cholinergic neurons
PSPEP8 198 Peptidergic (TrpM8), DRG VGLUT2 Rarres1 Slc34a2 Tmem54 28 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory peptidergic neurons
PSPEP7 199 Peptidergic (TrpM8), DRG VGLUT2 Rarres1 Gpsm3 Prdm12 64 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory peptidergic neurons
PSPEP6 200 Peptidergic (TrpM8), DRG VGLUT2 Gfra3 Angpt4 Runx1 54 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory peptidergic neurons
PSPEP5 201 Peptidergic (PEP1.2), DRG VGLUT2 Trpv1 Fam169b Aqp1 30 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory peptidergic neurons
PSPEP2 202 Peptidergic (PEP1.3), DRG VGLUT2 Calca Gm13582 Ptgir 102 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory peptidergic neurons
PSPEP4 203 Peptidergic (PEP1.1), DRG VGLUT2 Calca 6030408B16Rik Samsn1 117 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory peptidergic neurons
PSPEP3 204 Peptidergic (PEP1..4), DRG VGLUT2 Calca Traf3ip3 Prdm12 92 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory peptidergic neurons
PSPEP1 205 Peptidergicv (PEP2), DRG VGLUT1VGLUT2 Calca Asic3 Ptgir 78 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory peptidergic neurons Remaining heterogeneity for VGLUT1
PSNF3 206 Neurofilament (NF2/3), DRG VGLUT1VGLUT2 Trappc3l Ptgfr Ahnak2 31 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory neurofilament neurons
PSNF2 207 Neurofilament (NF4/5), DRG VGLUT1VGLUT2 Nefm Palm3 Nefh 57 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory neurofilament neurons Remaining heterogeneity for Nitric oxide
PSNF1 208 Neurofilament (NF1), DRG VGLUT1VGLUT2 Ppm1j Tbx3os2 Ahnak2 38 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory neurofilament neurons Remaining heterogeneity for Nitric oxide
PSNP1 209 Non-peptidergic (TH), DRG VGLUT2VGLUT3 Fam19a4 Fbp2 Piezo2 Tlx3 Paqr5 282 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory non-peptidergic neurons
PSNP2 210 Non-peptidergic (NP1.1), DRG VGLUT2 Gm7271 Chrna6 Ctxn3 72 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory non-peptidergic neurons
PSNP3 211 Non-peptidergic (NP1.2), DRG VGLUT2 Mrgprd 9530053A07Rik Lpar3 270 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory non-peptidergic neurons
PSNP4 212 Non-peptidergic (NP2.1), DRG VGLUT2 Mrgpra3 Otoa Calcb 45 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory non-peptidergic neurons
PSNP5 213 Non-peptidergic (NP2.2), DRG VGLUT2 Mrgpra3 Cpb1 Isl2 88 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory non-peptidergic neurons
PSNP6 214 Non-peptidergic (NP3), DRG VGLUT2 Nppb Tmem233 Il31ra 132 Dorsal root ganglion Dorsal root ganglion Neural crest Peripheral sensory non-peptidergic neurons
COP1 215 Committed oligodendrocytes cells (COP) Neu4 Brca1 1532 CNS CNS CNS Oligodendrocytes
COP2 216 Committed oligodendrocytes cells (COP), pons/medulla specific Tnr Rinl 254 CNS Pons/medulla (possible batch effect) CNS Oligodendrocytes
NFOL2 217 Newly formed oligodendrocytes (NFOL), pons/medulla specific Tmem2 Gm26834 181 CNS Pons/medulla (possible batch effect) CNS Oligodendrocytes
NFOL1 218 Newly formed oligodendrocytes (NFOL) Cnksr3 H2-Ab1 1612 CNS CNS CNS Oligodendrocytes
MFOL2 219 Myelin forming oligodendrocytes (MFOL) 2210011C24Rik Wfdc18 Tmem141 2415 CNS CNS CNS Oligodendrocytes
MFOL1 220 Myelin forming oligodendrocytes (MFOL) Ccp110 Snx33 3684 CNS Pons/medulla (possible batch effect) CNS Oligodendrocytes
MOL1 221 Mature oligodendrocytes Opalin Ninj2 8715 CNS CNS CNS Oligodendrocytes
MOL2 222 Mature oligodendrocytes, hindbrain Hapln2 Dock5 10011 CNS Pons/medulla (possible batch effect) CNS Oligodendrocytes
MOL3 223 Mature oligodendrocytes, spinal cord enriched (high Klk6) Klk6 Nkx2-9 1849 CNS Spinal cord-enriched CNS Oligodendrocytes
CHOR 224 Chorid plexus epithelial cells Ttr Folr1 Clic6 458 Medulla,Thalamus Medulla,Thalamus CNS Choroid epithelial cells
HYPEN 225 Hypendymal cell, subcommissural organ Spp2 Sspo 111 Subcommissural organ Subcommissural organ CNS Subcommissural organ hypendymal cells
EPSC 226 Ependymal cells, spinal cord 1500015O10Rik Slc26a3 1700012B09Rik 414 Spinal cord Spinal cord CNS Ependymal cells
EPEN 227 Ependymal cells Ccdc153 Krt15 774 Brain Brain CNS Ependymal cells
EPMB 228 Ependymal cells, midbrain Tnnt3 Cfap126 69 Midbrain dorsal Dorsal midbrain pia Mesencephalon Ependymal cells
RGDG 229 Dentate gyrus radial glia-like cells E330013P04Rik Hopx 327 Dentate gyrus Dentate gyrus subgranular zone Telencephalon Dentate gyrus radial glia-like cells
RGSZ 230 Subventricular zone radial glia-like cells 2810459M11Rik Gm14964 756 Striatum dorsal,Striatum ventral Striatum, rostral migragtory stream, olfactory bulb Telencephalon Subventricular zone radial glia-like cells
ACTE1 231 Telencephalon astrocytes, fibrous Fam107a Cbs 2974 Telencephalon Telencephalon Telencephalon Astrocytes
ACTE2 232 Telencephalon astrocytes, protoplasmic Ppp1r3g Gm11627 3973 Telencephalon Telencephalon Telencephalon Astrocytes
ACOB 233 Olfactory astrocytes Islr Slc6a11 1438 Olfactory bulb Olfactory bulb periglomerular layer Telencephalon Astrocytes
ACNT1 234 Non-telencephalon astrocytes, protoplasmic Slc7a10 Mfsd2a 6642 Hypothalamus,Thalamus,Midbrain dorsal,Midbrain ventral,Pons,Medulla,Spinal cord Non-telencephalon Diencephalon,Mesencephalon,Rhombencephalon,Spinal cord Astrocytes
ACNT2 235 Non-telencephalon astrocytes, fibrous Agt Apoc1 2568 Hypothalamus,Thalamus,Midbrain dorsal,Midbrain ventral,Pons,Medulla,Spinal cord Non-telencephalon Diencephalon,Mesencephalon,Rhombencephalon,Spinal cord Astrocytes
ACMB 236 Dorsal midbrain Myoc-expressing astrocyte-like Myoc Gfap 861 Midbrain dorsal Dorsal midbrain Mesencephalon Astrocytes
ACBG 237 Bergmann glia Gdf10 Timp4 921 Cerebellum Cerebellum Rhombencephalon Astrocytes
OEC 238 Olfactory ensheathing cells Prss56 Mgst1 2031 Olfactory bulb Olfactory bulb Neural crest Olfactory ensheathing cells
OPC 239 Oligodendrocytes precursor cells Pdgfra C1ql1 820 CNS CNS CNS Oligodendrocyte precursor cells
SCHW 240 Schwann cells Mpz Ncmap 47 Dorsal root ganglion Dorsal root ganglion Neural crest Schwann cells
SATG2 241 Satellite glia Fbln2 Ceacam10 654 Dorsal root ganglion,Sympathetic ganglion Dorsal root ganglion,Sympathetic ganglion Neural crest Satellite glia
SATG1 242 Satellite glia, proliferating Cdc20 Tex40 30 Dorsal root ganglion Dorsal root ganglion Neural crest Satellite glia
ENTG1 243 Enteric glia, proliferating Cenpf Hist1h2ap Cks2 163 Enteric nervous system Enteric nervous system Neural crest Enteric glia
ENTG2 244 Enteric glia Hspa1a Casp4 2160 Enteric nervous system Enteric nervous system Neural crest Enteric glia
ENTG3 245 Enteric glia Hspa1a Parp14 1135 Enteric nervous system Enteric nervous system Neural crest Enteric glia
ENTG4 246 Enteric glia Tax1bp3 4930589L23Rik 4044 Enteric nervous system Enteric nervous system Neural crest Enteric glia
ENTG5 247 Enteric glia Fam198b 4930589L23Rik Olfml2a Scn7a Col18a1 1132 Enteric nervous system Enteric nervous system Neural crest Enteric glia
ENTG6 248 Enteric glia Ifi27l2a Lbp H2-Q7 811 Enteric nervous system Enteric nervous system Neural crest Enteric glia
ENTG7 249 Enteric glia Col12a1 Cpxm2 1041 Enteric nervous system Enteric nervous system Neural crest Enteric glia
ENMFB 250 Enteric mesothelial fibroblasts Dpt Spon2 Lum 49 Enteric nervous system Enteric nervous system Neural crest Enteric glia
ABC 251 Vascular leptomeningeal cells Mgp Slc47a1 Dapl1 137 CNS Pia/meninges surface Neural crest Vascular and leptomeningeal cells
VLMC2 252 Vascular leptomeningeal cells Slc6a13 Ptgds 662 CNS Olfactory bulb-enriched Neural crest Vascular and leptomeningeal cells
VLMC1 253 Vascular leptomeningeal cells Dcn Fam180a 702 CNS CNS Neural crest Vascular and leptomeningeal cells
VECA 254 Vascular endothelial cells, arterial Igf2 Sema3g Gkn3 109 CNS CNS Mesoderm Vascular smooth muscle cells
PER3 255 Pericytes Kcnj8 Anpep 298 CNS CNS Mesoderm Vascular smooth muscle cells
VSMCA 256 Vascular smooth muscle cells, arterial Acta2 Mustn1 1221 CNS CNS Mesoderm Vascular smooth muscle cells
PER1 257 Pericytes Higd1b Degs2 Ndufa4l2 Rgs5 Flt1 4725 CNS CNS Mesoderm Pericytes
PER2 258 Pericytes, possibly mixed with VENC Ecscr Tbxa2r Cd93 488 CNS CNS Mesoderm Pericytes
VECC 259 Vascular endothelial cells, capillary Ecscr Gadd45a 1025 CNS CNS Mesoderm Vascular endothelial cells
VECV 260 Vascular endothelial cells, venous Ly6c1 Scgb3a1 2780 CNS CNS Mesoderm Vascular endothelial cells
PVM1 261 Perivascular macrophages Pf4 Cd74 1390 CNS CNS Mesoderm Perivascular macrophages
PVM2 262 Perivascular macrophages, activated Pf4 Cxcl2 639 CNS CNS Mesoderm Perivascular macrophages
MGL3 263 Microglia, activated Ccl4 Tnf 1335 CNS CNS Mesoderm Microglia
MGL2 264 Microglia, activated Tmem119 Casp8 1820 CNS CNS Mesoderm Microglia
MGL1 265 Microglia P2ry12 Ccr6 2270 CNS CNS Mesoderm Microglia