Excitatory neurons, hypothalamus


Likely locationSubparafascicular nucleus
Developmental compartmentDiencephalon
Marker genes Shox2 Aldh3b2 Ramp3
CommentsFurther split possible based on VGLUT1
Taxon Neurons
CNS neurons
Di- and mesencephalon neurons
Di- and mesencephalon excitatory neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
371.4 Shox2 short stature homeobox 2
262.2 Ramp3 Receptor activity-modifying protein 3
220.5 Synpo2 Synaptopodin-2
183.1 Rasl11a Ras-like protein family member 11A
180.6 Rasd1 Dexamethasone-induced Ras-related protein 1

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.