Inhibitory neurons, thalamus


Likely locationReticular nucleus of the thalamus (Sst low)
Developmental compartmentDiencephalon
Marker genes Six3 St8sia4 Esrrg
CommentsTrinarization detects VGLUT2
Taxon Neurons
CNS neurons
Telencephalon interneurons
Telencephalon inhibitory interneurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
653.1 Six3 Homeobox protein SIX3
582.5 Pvalb parvalbumin
249.0 Esrrg Mus musculus estrogen-related receptor gamma (Esrrg), transcript variant 5, mRNA.
129.6 Cplx3 Complexin-3
120.2 Ramp3 Receptor activity-modifying protein 3

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.