Serotonergic neurons, hindbrain


Likely locationVentral midbrain, rostral pons
Developmental compartmentRhombencephalon
Marker genes Gchfr Il1r1 Slc18a2
CommentsRemaining heterogeneity for VGLUT3
Taxon Neurons
CNS neurons
Cholinergic, monoaminergic and peptidergic neurons
Cholinergic and monoaminergic neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
2728.6 Gchfr GTP cyclohydrolase 1 feedback regulatory protein
2531.3 Slc6a4 Sodium-dependent serotonin transporter
2191.3 Tph2 Tryptophan 5-hydroxylase 2
1662.0 Dlk1 delta like non-canonical Notch ligand 1
1344.5 Slc18a2 Synaptic vesicular amine transporter

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.