Inhibitory neurons, midbrain


RegionMidbrain ventral
Likely locationVentral/caudal midbrain (SN, VTA, reticular nucleus)
Developmental compartmentMesencephalon
Marker genes Pax5 Gabrq
Taxon Neurons
CNS neurons
Di- and mesencephalon neurons
Di- and mesencephalon inhibitory neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
1586.2 Pax5 Paired box protein Pax-5
303.2 En1 Homeobox protein engrailed-1
143.8 Tal1 T cell acute lymphocytic leukemia 1
139.4 Asb4 Mus musculus ankyrin repeat and SOCS box-containing 4 (Asb4), transcript variant 2, mRNA.
123.3 Baiap3 BAI1 associated protein 3

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.