Inhibitory neurons, midbrain


RegionMidbrain dorsal,Midbrain ventral
Likely locationMidbrain
Developmental compartmentMesencephalon
Marker genes Syt2 Nrtn Smim17
Taxon Neurons
CNS neurons
Di- and mesencephalon neurons
Di- and mesencephalon inhibitory neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
178.0 Syt2 synaptotagmin II
125.2 Gata3 Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.
101.7 Pax7 Paired box protein Pax-7
88.9 Vamp1 vesicle-associated membrane protein 1
69.2 Tal1 T cell acute lymphocytic leukemia 1

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.