Inhibitory neurons, midbrain


RegionMidbrain dorsal
Likely locationAnterior pretectal nucleus
Developmental compartmentMesencephalon
Marker genes Lhx1os Emx2
Taxon Neurons
CNS neurons
Di- and mesencephalon neurons
Di- and mesencephalon inhibitory neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
343.6 Lhx1os LIM homeobox 1, opposite strand
284.1 Gata3 Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.
245.7 Six3 Homeobox protein SIX3
78.7 Tal1 T cell acute lymphocytic leukemia 1
66.7 Gm27199 predicted gene 27199

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.