Inhibitory neurons, midbrain


RegionMidbrain dorsal
Likely locationSuperior colliculus (sparse)
Developmental compartmentMesencephalon
Marker genes Tnnt1 Tnni3 Gata3
Taxon Neurons
CNS neurons
Di- and mesencephalon neurons
Di- and mesencephalon inhibitory neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
496.4 Tnnt1 troponin T1, skeletal, slow
408.9 Lhx1os LIM homeobox 1, opposite strand
318.3 Gata3 Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.
270.5 Tnni3 troponin I, cardiac 3
228.5 Pcp2 Purkinje cell protein 2

Heatmap and tSNE plot

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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.