Inhibitory neurons, midbrain


RegionMidbrain dorsal
Likely locationSuperior colliculus
Developmental compartmentMesencephalon
Marker genes Fibcd1 Mgarp Lmo1 Vwc2 Npffr1
CommentsTrinarization detects VGLUT2
Taxon Neurons
CNS neurons
Di- and mesencephalon neurons
Di- and mesencephalon inhibitory neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
456.9 Fibcd1 Fibrinogen C domain-containing protein 1
289.9 Mgarp Protein MGARP
231.9 Cbln1 Cerebellin-1 Cerebellin
198.8 Dmbx1 Diencephalon/mesencephalon homeobox protein 1
196.3 Lmo1 Rhombotin-1

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.