R-LM border Cck interneurons, cortex/hippocampus


Likely locationHippocampus (sr/slm),Cortex
Developmental compartmentTelencephalon
Marker genes Yjefn3 Hdhd3 Npas1
CommentsRemaining heterogeneity for VGLUT3, Nitric oxide
Taxon Neurons
CNS neurons
Telencephalon interneurons
Telencephalon inhibitory interneurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
799.0 Yjefn3 YjeF N-terminal domain containing 3
785.0 Htr3a 5-hydroxytryptamine (serotonin) receptor 3A
614.8 Npas1 Neuronal PAS domain-containing protein 1
390.5 Gm8797
315.2 Krt73 Keratin, type II cytoskeletal 73

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
Preview not available. Click for full-size image.

Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.