Inhibitory neurons, septal nucleus


RegionStriatum dorsal, Striatum ventral
Likely locationSeptal nucleus
Developmental compartmentTelencephalon
Marker genes A230065H16Rik Zic1
Taxon Neurons
CNS neurons
Cholinergic, monoaminergic and peptidergic neurons
Peptidergic neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
189.5 A230065H16Rik Mus musculus LBH domain containing 2 (Lbhd2), transcript variant 1, mRNA.
33.6 Zic1 zinc finger protein of the cerebellum 1
27.9 Cacna2d2 Voltage-dependent calcium channel subunit alpha-2/delta-2 Voltage-dependent calcium channel subunit alpha-2-2 Voltage-dependent calcium channel subunit delta-2
27.9 Arhgap6 Rho GTPase activating protein 6
25.4 Scn5a Sodium channel protein type 5 subunit alpha

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.