Developmental cell types and states (clusters)

Symbol Index Class Subclass Likely location Cells Markers Comment
ParEndo 0 Gastrulation Parietal endoderm 11 Srgn Dppa5a Gata4 Pth1r Tinagl1 Fxyd3 Expresses Srgn, Pdgfra, Lama1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
1 Gastrulation Undefined 26 Rhox5 Zbtb7b Trap1a Apoc1 Zfp42 AC158554.1 High doublet score; extraembryonic endoderm and ectoderm
TrophEct 2 Gastrulation Extraembryonic ectoderm 438 Tex19.1 Elf5 Gjb3 Dppa4 Zfp42 AC158554.1 Expresses Elf; See trophoblast auto-annotation
FGut4 3 Gastrulation Endoderm 49 Apela Habp2 Hhex Car4 Dpp4 Rfx6 See auto-annotation
FGut1 4 Gastrulation Endoderm 78 Apela Apoa1 Gpx2 Krt18 Cpn1 Pcbd1 See auto-annotation
FGut3 5 Gastrulation Endoderm 63 Apela Plscr1 Hhex Krt18 Foxa3 Tnnc1 See auto-annotation
FGut2 6 Gastrulation Endoderm 22 Pyy Nme2 Krt8 Krt18 Cpn1 Kdf1 See auto-annotation
VEnd1 7 Gastrulation Endoderm 247 Spink1 Eprn Trap1a Xlr3a Vil1 Fmr1nb See auto-annotation
VEnd3 8 Gastrulation Visceral endoderm 98 Pga5 Arid3c Cdkn2a Akr1c13 Pla2g12b Nxf7 Expresses Cer1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
VEnd2 9 Gastrulation Visceral endoderm 303 Pga5 Fgfbp1 Cdkn2a Slc39a4 Amn Ctsh Expresses Cer1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
ExVE5 10 Gastrulation Extraembryonic endoderm 127 S100g Tslrn1 Apoa2 Rbp4 Fxyd2 2210011C24Rik Cubn (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
ExVE4 11 Gastrulation Extraembryonic endoderm 613 Cubn Ank Apoa2 Apob Amn Smlr1 Cubn (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
ExVE3 12 Gastrulation Extraembryonic endoderm 120 Spink1 Gcgr Afp Apob Amn Slc39a5 Cubn (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
ExVE2 13 Gastrulation Extraembryonic endoderm 901 Apom Plbd1 Apoa4 Rbp4 2610528J11Rik Tdh See auto-annotation
ExVE1 14 Gastrulation Extraembryonic endoderm 645 Aldob Pnpo Lgals2 Car7 4933402E13Rik Tdh See auto-annotation
CardCres 15 Gastrulation Cardiac mesoderm 300 Actc1 Myl4 Tnnt2 Myl3 Ankrd1 Ttn Expresses Nkx2-5; see auto-annotation
MesPer 16 Gastrulation Osteochondral mesoderm 294 Hand1 Smoc2 Plac8 Pmp22 Cryab Ahnak See auto-annotation
MesOst 17 Gastrulation Undefined 85 Tdo2 Tnni1 Plac8 Krt18 Cryab Aard Low UMI; no markers on heatmap
Mesod4 18 Gastrulation Mesoderm 635 Mesp1 Mesp2 Gata4 Id2 Dusp9 Agtrap Expresses Lefty2
Mesod3 19 Gastrulation Mesoderm 352 Adrb3 Myl7 Ifitm1 Cyp26a1 Dusp9 Myl1 Expresses Lefty2 and Alx1 enriched
Mesod5 20 Gastrulation Mesoderm 421 Phlda2 Slc22a18 Cfc1 Vrtn Msx2 Amhr2 See auto-annotation
Mesod6 21 Gastrulation Hematoendothelial lineage 45 Etv2 Cd40 Cfc1 Mixl1 Kdr Klhl6 Tal1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
CardCr 22 Gastrulation Mesenchyme 443 Hand1 Hoxd1 Spin2c Plac1 Bmp4 Morc4 Msx2, Plac1, Unc5c (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Mesn1 23 Gastrulation Undefined 317 Hand1 Pard6b Car14 Krt18 Msx2 Smtnl2 Low UMI; no markers on heatmap
HemEndPr1 24 Gastrulation Hematoendothelial lineage 139 Etv2 Tom1l1 Tmem88 Lmo2 Myc Smtnl2 Expresses Tal1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
HemEndPr2 25 Gastrulation Hematoendothelial lineage 32 Etv2 Btbd10 Bmp2 Lmo2 Kdr Abi3 Expresses Tal1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
HematProg 26 Gastrulation Hematoendothelial lineage 70 Fgf3 Hapln1 Hhex Skap1 Runx1 Fli1 Expresses Tal1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Mesod2 27 Gastrulation Nascent mesoderm 1049 Lefty2 Rhbg Tdgf1 Cyp26a1 Frzb Gna14 Expresses Lefty2 and T (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Mesod1 28 Gastrulation Nascent mesoderm 414 T Wnt8a Hoxb1 Hes7 Psors1c2 Tcea3 Enriched in T (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
GermC 29 Gastrulation Primordial germ cells 36 Cdx2 Psmb8 Dnd1 Hes7 Ifitm3 Tdrd5 Expresses Tfap2c, Fgf8, Bmp4, Cdx2, T (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Epi1 30 Gastrulation Epiblast 3209 Utf1 Slc7a3 Dnmt3b L1td1 Rbpms2 Pou5f1 See PSC auto-annotation
Epi2 31 Gastrulation Epiblast 992 Utf1 Gm14399 Pim2 Cdh1 Epha1 Pou5f1 See PSC auto-annotation, it has low levels of T and Eomes
Epi3 32 Gastrulation Undefined 671 T Tbx6 Apln Mixl1 Psors1c2 Tcea3 Low UMI; no markers on heatmap
DVE1 33 Gastrulation Definitive endoderm 247 Trh Sfn Tmprss2 Elf3 Crb3 Nlrp4e See auto-annotaton; Trh and Hesx1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
DVE2 34 Gastrulation Definitive endoderm 421 Cer1 Ermn Sox17 Ap1s3 Ovol2 Slc16a1 Trh and Hesx2
DVE3 35 Gastrulation Anterior primitive streak 190 Cer1 Gsc Upp1 Fgf5 Chrd Pkd1l1 Cer1, Lhx1, Gsc, Mixl1
AEMeso 36 Gastrulation Node 230 Noto Dnajb13 Foxj1 Pifo Chrd 1700028P14Rik Noto, Foxj1
37 Gastrulation Undefined 10 Krt19 9530036O11Rik Car3 Rab38 Tgm2 Usp18 Doublets? T, Lmx1a, Noto, Krt19, Shh, Epcam
ChorProg 38 Radial glia Early choroid plexus Tela choroidea of fourth ventricle 43 Gmnc A930003A15Rik Ccno Cela1 Actn3 Anxa3 Foxj1, Trp73; Mafb, Otx2, Msx1, Msx2, Wnt1, Lmx1a
RglHB1 39 Radial glia Fourth-ventricle roof plate Fourth ventricle roof plate 338 Rspo1 Gm48898 Wnt3a Msx1 Msx2 Cx3cl1 Mafb (DOI: 10.1016/j.bbrc.2016.12.150), Otx2, Msx1, Msx2, Wnt1, Lmx1a
Mesn2 40 Mesenchyme Mesenchyme Failed spatial mapping 1251 Lum Cpa2 Fabp7 Pcolce Cnn2 Tmem119 See @Msn auto-annotation
Mesn3 41 Mesenchyme Mesenchyme External connective tissue of the head 1719 Twist2 Adamts6 Col3a1 Colec12 Parm1 Mkx See @Msn auto-annotation
Mesn4 42 Mesenchyme Mesenchyme Very sparse, outside of nervous system 840 Twist2 Vrk2 Col9a1 Col26a1 Snai1 Crispld1 See @Msn auto-annotation
Mesn5 43 Mesenchyme Mesenchyme Internal connective tissue 1316 Tbx1 Gm5127 Col9a1 Pcolce Tbx18 Tmem119 See @Msn auto-annotation
Mesn6 44 Mesenchyme Mesenchyme Mandibular component of first branchial arch 852 Barx1 Stk26 Prrx2 Ppfibp2 Col23a1 Fli1 See @Msn auto-annotation and Lhx8 suggests oral mesenchyme (doi: 10.1096/fj.14-267500)
Mesn7 45 Mesenchyme Mesenchyme Maxillary component of first branchial arch 999 Prrx1 Taf5 Prrx2 Serpinf1 Col23a1 Fli1 See @Msn auto-annotation
Mesn8 46 Mesenchyme Mesenchyme Lateral nasal process/placode 865 Alx3 Car12 Alx4 D030045P18Rik Itga8 Mdfi See @Msn auto-annotation
Mesn9 47 Mesenchyme Mesenchyme Medial nasal process/placode 559 Alx1 Eepd1 Dpep1 Tnfaip6 Hmcn1 Tmem119 See @Msn auto-annotation
48 Mesenchyme Undefined Failed spatial mapping 307 Alx1 Dhx32 Ptx3 Pcolce Cnn2 Oaf No markers on heatmap
49 Mesenchyme Undefined Internal connective tissue 72 Cped1 Scube3 Ddr2 Eya1 Snai1 Ror1 Doublets? High doublet score
50 Mesenchyme Undefined Failed spatial mapping 29 Twist2 Six4 Twist1 Serpinf1 Col23a1 Sycp2l Doublets? High doublet score
NEpit1 51 Neural tube Floor plate 59 9030622O22Rik Sema3e Foxd4 Car4 Igfbp5 Trabd2b Nkx2-9 (https://doi.org/10.1016/S0925-4773(98)00035-5); Shh, Foxa1, Foxa2, Nkx2-2
NEpit4 52 Neural tube Undefined 162 Meox1 Mir17hg Hotairm1 Prtg Trim71 Fignl2 Relatively high doublet score; early neural tube and paraxial mesoderm annotation
NEpit3 53 Neural tube Caudal 1668 Hes3 Gm6563 Lin28a Prtg Hmga1 Akr1b3 Hotairm1, Hoxa2, Pax5, Pax8
NEpit2 54 Neural tube Anterior 771 Hesx1 Irs4 Eras Wfdc2 Lrp2 Klk8 See ANE auto-annotation
55 Neural tube Optic cup Optic cup 865 Six6 Vax2 A730049H05Rik Trpm1 Hmx1 Mitf See auto-annotation
NMP 56 Neural tube Neuromesodermal progenitors 372 Hoxaas3 Cdx4 Cdx1 Hoxb9 Hoxa7 Hoxa9 T and Cdx genes
MesnPhar1 57 Mesoderm Cardiac 350 Arg1 Tnni1 Wnt2 Gata6 1010001N08Rik Hand2 See auto-annotation; Nkx2-5, Tnni1, Myl1, others (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
PxMeso2 58 Mesoderm Paraxial 295 Meox1 Aldh1a2 Hoxa1 Meox2 P3h2 Ism1 Tcf15, Arg1, Meox1, Meox2 at E8 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
PxMeso1 59 Mesoderm Paraxial 839 Tbx1 Gm12829 Prrx2 Colec12 Col23a1 Tmem119 Shares markers with 58, but lower levels
60 Mesoderm Pharyngeal 281 Tcf21 Msc Hlx Col13a1 Gng11 Edn1 Tcf21, Msc, Tbx1 (doi: 10.1073/pnas.1208690109)
NeurCrest2 61 Neural crest Neural crest 800 Fam212a Emc8 Plcg2 Ccl6 Mogat2 Timm8a1 See auto-annotation
NeurCrest1 62 Neural crest Neural crest 499 Sox10 Klhl21 Plp1 Ets1 Grrp1 Tmc6 See auto-annotation
63 Neural crest Neural crest 95 Sox10 Erbb2 Plp1 Cdh6 Ednra Npr3 See auto-annotation
64 Neural crest Neural crest Trunk and vagal neural crest 506 Sox10 Fam89a Cdh19 Erbb3 Heyl Npr3 See auto-annotation
PxMeso3 65 Bad cells Undefined 610 Meox1 Hbb-y Foxc2 Pgk1 Cnn2 Eno3 Low UMI, No markers on heatmap
66 Bad cells Undefined Failed spatial mapping 2467 Alx1 Gm10320 Glipr2 Mt1 Cnn2 Mdfi Low UMI
67 Bad cells Undefined Failed spatial mapping 3807 Crabp2 Gm10320 Hes5 Mt1 Lix1 Id1 Low UMI
68 Bad cells Undefined Failed spatial mapping 3764 Mapk12 Lhx2 Shisa2 Fam181b Rab39 Tgif1 Low UMI
Ectoderm5 69 Endoderm Gut 84 Pyy Nkx2-3 Cldn4 Krt18 Prdm1 Nkx2-6 See FGut auto-annotation
Ectoderm3 70 Endoderm Gut 224 Nkx2-5 Gm20467 Capn6 Krt18 Crb3 Kdf1 Pharyngeal endoderm as suported by Pax9, Nkx2-3, Nkx2-5 at E8 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Ectoderm4 71 Endoderm Gut 162 Pax9 Smoc2 Cldn6 Has2 Crb3 Cldn8 Pax9, Smoc2, Gpx2 at E8 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Ectoderm1 72 Ectoderm Early ectoderm 937 Rab25 Lamtor3 Cldn6 Cldn7 Spint1 Kdf1 Primarily E8; Heterogeneous mixture of cells that are Six1/Six4+ or Pax2/Pax8+, suggesting preplacodal (https://doi.org/10.1016/j.ydbio.2006.03.009)
Ectoderm2 73 Ectoderm Dorsal early ectoderm 86 Wnt6 Platr22 Gjb3 Tmem54 Slc2a3 Tacstd2 Primarily E8; Bmp2 (PMID: 9187146)
74 Ectoderm Undefined Skin 14 Foxi2 3830417A13Rik Gm16136 Perp Prss8 Ldoc1 Doublets? Ventricular zone auto-annotation
Surfecto 75 Ectoderm Surface ectoderm Skin 492 Krt7 4631405K08Rik Trp63 Fermt1 Cdh3 Pdlim1 E9-10; Expresses Trp63 (10.1007/s00018-017-2701-z); Expresses Sostdc1 (DOI: 10.1242/dev.174888)
OticV 76 Ectoderm Otic vesicle Otic vesicle 183 Oc90 Cldn9 Tbx2 Epcam Cdh3 Hs3st6 See IEar auto-annotation
PharEpi 77 Ectoderm Pharyngeal epithelium Skin of pharynges, somites/dermatomes(?) 210 Vgll2 Pax1 Cldn4 Plet1 Igfbp5 Gdnf Expresses Pax1 (8565834); Expresses Vgll2 (https://doi.org/10.1016/j.ydbio.2011.06.034)
OrEcto1 78 Ectoderm Oral ectoderm Oral region epithelium 116 Vgll2 Ntf5 Trp63 Fermt1 Bcam Pdgfa Pitx1/2 is enriched; Expresses Fgf8 and Vgll2 (DOI: 10.1126/sciadv.abb0119); Vgll2 (https://doi.org/10.1016/j.ydbio.2011.06.034), Also expresses Sox14, Emx1, Col25a1.
LensEcto 79 Ectoderm Lens Lens, surface ectoderm 280 Aldh1a3 Hapln1 Upk3bl Fermt1 Ccdc68 Sp6 Hmx1 (https://doi.org/10.1016/S0925-4773(00)00488-3), Pax6, Six3, Meis1, Meis2 (https://doi.org/10.1371/journal.pgen.1006441)
OrEcto2 80 Ectoderm Oral ectoderm Oral ectoderm, surface ectoderm of pharynges, caudal tip of neural tube 75 Aldh1a3 Stk26 Krt14 Fermt1 Bmp4 Pdgfa Enriched in Pitx2, Krt14, Lef1 (doi: 10.1242/dev.186023, doi:10.1242/dev.174888); Bmp4 (doi: 10.1101/gad.12.23.3764, https://doi.org/10.1016/S0092-8674(05)80083-2)
Ectoderm6 81 Ectoderm Adenohypophyseal placode Somitic and oral ectoderm, optic cup, Rathke's pouch? 188 Pitx1 Gm12446 Upk3bl Fermt1 Cryab Foxe1 Pitx1/2 is enriched; Expresses Hesx1 (https://doi.org/10.1016/j.ydbio.2006.03.009)
NasPitL 82 Ectoderm Lateral nasal pit Lateral nasal process/placode? 204 Six6 Sema3d Cldn4 Cldn3 Esrp1 Cldn8 Expresses Fgf8 (doi: 10.1242/dev.02143); Expresses Pax7 (https://doi.org/10.1016/S0896-6273(00)00121-5); Expresses Fgf8, Fgf9 and Fgf17 (https://doi.org/10.1016/S0925-4773(00)00518-9)
OlfPit1 83 Ectoderm Olfactory pit Nasal pit 320 Espn Dlx6 Mapk13 Cldn3 Grhl2 Rasef Expresses Dmrt3 (https://doi.org/10.1016/S0925-4773(03)00094-7); Expresses Pax6, Six3, Rprm, Pcdh19, Fgf12, Mecom that are known to mark olfactory epithelium (DOI: 10.1242/dev.174888)
OlfPit2 84 Ectoderm Olfactory pit Vomeronasal organ 48 Aldh1a3 Arhgap27os2 Upk3bl Cldn7 Esrp1 St14 Pitx1 is enriched but not Pitx2 (doi:10.1101/gad.13.4.484); Expresses Aldh1a3 (doi: 10.1016/j.ydbio.2006.11.035); Expresses Dmrt3 (https://doi.org/10.1016/S0925-4773(03)00094-7)
85 Ectoderm Undefined Failed spatial mapping 1029 Aldh1a3 Anxa2 Hey1 Krt18 Ap1m2 Pdlim1 Bad cells? Top enriched genes are erythrocyte genes; Low UMI
OlfEpit 86 Ectoderm Olfactory epithelium 11 Acsm4 Sult1e1 Fmo6 Pla2r1 Cyp2g1 Eya4 Related to 83; Expresses Aox2 (doi: 10.1074/jbc.M408734200)
87 Blood Undefined 29 Ccdc190 Arhgef18 Hepacam Cldn10 Dnah9 Gm973 Doublets? Astroependymal markers, relatively high doublet score
88 Blood Undefined 28 Hbb-bt 2610035D17Rik Prss23 Fech Cdk6 Antxr1 Doublets? Radial glia markers, relatively high doublet score
89 Blood Undefined 29 Hbb-bt Adcyap1r1 Hbb-bs Ramp1 Mmd2 Mgst1 Doublets? Radial glia markers, relatively high doublet score
90 Blood Undefined 20 Olig1 Zfp141 Olig2 Pdgfra Cbr3 Itpr2 Doublets? OPC markers, relatively high doublet score
91 Blood Undefined 10 Dscaml1 Klhl12 Hba-a1 Fech Syt16 Fam241b Doublets? Rbfox3
92 Blood Undefined 33 Hbb-bt Pcdh8 Hbb-bs Fech Snca Rbfox1 Doublets? Rbfox3
93 Blood Undefined 101 Hbb-bt Rundc3b Fam46c Fech Snca Blvrb Doublets? Erythrocyte and @VGLUT2
94 Blood Undefined 108 Hbb-bt Gad1 Hbb-bs Fech Snca Blvrb Doublets? Erythrocyte, @VGLUT2 and @GABA
95 Blood Undefined 138 Hbb-bt Lhx9 Hbb-bs Slc25a37 Hbq1b Blvrb Doublets? Erythrocyte and @VGLUT2
96 Blood Undefined 32 Hbb-bt Insm1 Hbb-bs Fech Snca Kat2b Doublets? Erythrocyte and @VGLUT2
Ery1 97 Blood Erythrocyte 5189 Alas2 Tubb2b Ptp4a3 Tubb3 H3f3b Fam220a See auto-annotation
Ery2 98 Blood Erythrocyte 1827 Hbb-bt Hbq1a Isg20 Fech Snca Rec114 See auto-annotation
Ery3 99 Blood Erythrocyte 860 Tspo2 Ube2l6 Trim10 Gypa F930017D23Rik Dhrs11 See auto-annotation
Ery4 100 Blood Erythrocyte 42 Tmcc2 Irgm2 Slfn14 Tspan8 F930017D23Rik Epb42 See auto-annotation
Ery5 101 Blood Erythrocyte 42 Car1 Ermap Cldn13 6030468B19Rik Nxpe2 Pklr See auto-annotation
EryProg1 102 Blood Erythroid progenitor 174 Mrap Cpne7 Klf1 Gata1 Smim1 Mir142hg See auto-annotation
EryProg2 103 Blood Erythroid progenitor Failed spatial mapping 228 Cited4 Csf2rb Klf1 Hbb-bh1 Smim1 Pklr See auto-annotation
EryProg3 104 Blood Erythroid progenitor Failed spatial mapping 1011 Cited4 Dnaja4 Klf1 Hbb-bh1 Acp5 Pklr See auto-annotation
EryProg4 105 Blood Erythroid progenitor 2042 Hsd3b6 Gm43661 Pdzk1ip1 Ncf4 Kel Hba-x Expresses erythroid progenitor markers
EryProg5 106 Blood Erythroid progenitor Failed spatial mapping 641 Hemgn Rnf212 Rhd Icam4 Hbq1b Hba-x See auto-annotation
107 Blood Undefined 97 Hsd3b6 Gm32061 Rhd Slc4a1 Kel AC117197.1 Doublets? High doublet score, @Pall and VZone auto-annotation
108 Blood Undefined Failed spatial mapping 170 Cited4 Ears2 Klf1 Hbb-bh1 Acp5 Kcnn4 Doublets? High doublet score, Fibroblast markers
Chondro 109 Fibroblast Chondrocytes 21 Matn1 Cnmd Col9a3 Acan Col2a1 Col11a2 Expresses Matn1, Cnmd, Acan, Runx1, Foxa3, Sox5 and Sox6
FibroE1 110 Fibroblast Early fibroblasts Trunk connective tissue 356 Hpse2 Six2 Alkal2 Tbx15 Gm29418 Runx2 Expresses Lum and localization
FibroE2 111 Fibroblast Early fibroblasts Heart (pericardium), meninges 1169 Dkk2 Veph1 Col3a1 Col8a2 Msx2 Mkx Expresses Lum and localization
FibroE3 112 Fibroblast Early fibroblasts 550 Lum Halr1 Col3a1 Osr1 Lamc3 Bgn See age distribution, auto-annotation
113 Fibroblast Undefined 68 Cldn11 Mri1 Fxyd5 Lox Sned1 Crispld1 Seems to overlap between dura and perivascular fibroblast-like cells on the t-SNE and in expression
114 Fibroblast Undefined 78 Col1a1 Nme2 Col1a2 Lox Wisp1 Crispld1 Cells are spread across early fibroblast, perivascular fibroblast-like cells, and dura on the t-SNE
FibroPV 115 Fibroblast Perivascular fibroblast-like cells 318 Tcf21 Mgp Tgfbi Matn2 Adam12 Vstm4 Checked top markers in https://doi.org/10.1038/nature25739; http://betsholtzlab.org/VascularSingleCells/database.html
Pia1 116 Fibroblast Pia 1 267 Dcn Kcne4 Cxcl16 A2m Olfml3 Col6a2 Expresses S100a6, Ngfr, Lama2; Also expresses Spon1 which might suggest ventral forebrain: https://doi.org/10.1016/j.devcel.2020.06.009
Pia2 117 Fibroblast Pia 2 1489 Slc6a13 Adra1a Itih5 S100a6 Nupr1 Gm30624 Expresses S100a6, Ngfr, Lama2; Also expresses Tff3 which might suggest ventral mid/hindbrain: https://doi.org/10.1016/j.devcel.2020.06.009
Pia3 118 Fibroblast Pia 3 895 Dcn C1qtnf7 Apod Cxcl12 Lrrc17 Col6a2 S100a6, Ngfr, Lama2; Also expresses Dusp6, Pla2g7 might suggest dorsal forebrain: https://doi.org/10.1016/j.devcel.2020.06.009
119 Fibroblast Undefined 57 Cldn11 Pir C1qtnf2 Sidt1 Slc7a11 Col6a2 Doublets? Expresses Flt1, Cldn5, Kcnj8
Meninges1 120 Fibroblast Intermediate meninges 1 1163 Slc6a13 Sod3 Gjb6 Sidt1 Cfh Mrgprf Low expression of arachnoid markers Ptgds, Crabp2 and pia marker S100a6
121 Fibroblast Undefined 43 Mfap5 Krtdap Igfbp6 S100a6 Nupr1 Igfbp3 Doublets? Expresses epithelial markers Krtdap and Sbsn (https://doi.org/10.1002/dvdy.21099)
Dura 122 Fibroblast Dura 408 Nov Slc16a9 Fxyd5 Thbd Slc47a1 Efemp1 Expresses Alpl, Foxc2, Nov, Fxyd5 (https://doi.org/10.1016/j.devcel.2020.06.009)
ABC 123 Fibroblast Arachnoid barrier cells 16 Lypd2 Dapl1 Asgr1 Itgbl1 Itih2 Klf5 Enriched in Cdh1 (https://doi.org/10.1016/j.devcel.2020.06.009)
Meninges2 124 Fibroblast Intermediate meninges 2 133 Cldn11 Mamdc2 Gjb2 Fmod Adam12 Ogn Expresses Ptgds but also low levels of S100a6, Nov
Arachnoid 125 Fibroblast Arachnoid 619 Ptgds Nphs2 Serpind1 Sult1a1 Nupr1 Slc13a3 Expresses Ptgds (https://doi.org/10.1016/j.devcel.2020.06.009)
126 Fibroblast Undefined 32 Ptgds Upk3a Serpind1 Cmbl Nupr1 Slc6a12 Doublets? Top enriched genes are all expressed in arachnoid
127 Fibroblast Undefined 31 Srgn Fst Slc6a20a Aqp8 Lamb1 Col4a1 Doublets? Expresses erythrocyte markers
128 Vascular Undefined 18 Ranbp3l Arhgef4 Islr Wnt4 Adam12 Lama2 Doublets? Relatively high doublet score, and astroependymal and fibroblast auto-annotation
129 Vascular Undefined 17 Ptgds Kif28 Asgr1 Aebp1 Nupr1 Slc13a4 Doublets? Relatively high doublet score
130 Vascular Undefined 140 Dcn Eml6 Slc22a6 Sidt1 Nupr1 Emp3 Doublets? Relatively high doublet score, and many auto-annotations
131 Vascular Undefined 19 Slc6a13 Bsn Ctsk Vtn Adamts12 Vstm4 Doublets? Relatively high doublet score, and many auto-annotations
132 Vascular Undefined 50 Kcnj8 Galntl6 Mmp9 Gm14005 Tbxa2r Pdgfrb Doublets? Relatively high doublet score
133 Vascular Undefined 193 Cldn5 Col6a1 Ly6c1 Vwa1 Adgrl4 Epas1 Doublets? Relatively high doublet score, and VEC and VLMC autio annotation
134 Vascular Undefined 34 Cldn5 Slc27a1 Ctla2a Esam Ecscr Hmgcs2 Doublets? Relatively high doublet score, and expresses erythrocyte genes
Peric1 135 Vascular Pericyte 1139 Kcnj8 Aspn Rgs5 Ndufa4l2 Tbxa2r Gper1 See auto-annotation
Peric2 136 Vascular Pericyte 325 Kcnj8 Dmp1 Rgs5 Gm14005 Foxs1 Itga1 See auto-annotation
VSM1 137 Vascular Vascular smooth muscle 70 Acta2 Slc16a12 Tagln Map3k7cl Hspb2 Myl9 See auto-annotation
VSM2 138 Vascular Vascular smooth muscle 175 Actg2 Eln Myh11 Mustn1 Cnn1 Crispld2 See auto-annotation
Vendo1 139 Vascular Endothelial 86 Fbln5 Gja5 Tm4sf1 Vwf Icam2 Sox7 Expresses Cldn5 and Flt1
Vendo2 140 Vascular Endothelial 54 Pglyrp1 Taf4b Ptprb Slco1c1 Erg Zfp366 See VEC auto-annotation
Vendo3 141 Vascular Endothelial 362 Pglyrp1 Car5a Flt1 Slco1c1 Adgrl4 Epas1 See VEC auto-annotation
Vendo4 142 Vascular Endothelial 632 Higd1b Chp2 Rgs5 Atp13a5 Apold1 Epas1 See VEC auto-annotation
Vendo5 143 Vascular Endothelial 349 Gja4 1700097N02Rik Ly6c1 Slco1c1 8430408G22Rik Epas1 See VEC auto-annotation
Vendo6 144 Vascular Endothelial 803 Pglyrp1 Rhbdl2 Abcf3 Slco1c1 Slc22a8 Grap See VEC auto-annotation
Vendo7 145 Vascular Endothelial 567 AU021092 Tmem154 Slc38a5 Foxq1 Adgrl4 Grap See VEC auto-annotation
Vendo8 146 Vascular Endothelial 249 Cd34 Adprm Aplnr Cd93 Tie1 Gimap6 See VEC auto-annotation
Vendo9 147 Vascular Endothelial 437 Clec14a Foxf1 Tmem252 Slco2a1 Icam1 Sox7 See VEC auto-annotation
148 Vascular Undefined Heart, ventricle 18 Clec1b Ctse Col15a1 Gngt2 Dysf Gimap6 Doublets? Expresses erythrocyte markers
149 Vascular Undefined 11 Gm20532 Gm9917 Htra3 Ecm1 Tie1 Npr1 Doublets? Expresses erythrocyte markers
150 Vascular Undefined 37 Esm1 Abcc9 Gpihbp1 Pecam1 Robo4 Cyyr1 Doublets? Expresses erythrocyte markers
Vendo10 151 Vascular Endothelial 83 Fam167b Gsg1 Plvap Lrg1 Myct1 Cyyr1 Expresses Cldn5 and Flt1
Angiob2 152 Vascular Angioblast Scattered 577 Clec1b Prl3b1 Emcn Cdh5 Mmrn1 Gimap4 See Angio auto-annotation; Plvap
Angiob3 153 Vascular Angioblast 748 D030007L05Rik Gpr182 Plvap Gngt2 Kcne3 Exoc3l4 See Angio auto-annotation; Plvap
154 Immune Undefined 10 Ctss Bcan C1qb Pld4 Laptm5 Cd14 Doublets? Also expresses astroependymal markers, relatively high doublet score
155 Immune Undefined 27 Fcer1g Eng C1qc Csf1r Ltc4s Cyth4 Doublets? Also expresses endothelial markers, relatively high doublet score
156 Immune Undefined 135 Tyrobp Rab11fip5 C1qc Fcgr3 Cd86 Adgre1 Doublets? Also expresses neuronal markers, relatively high doublet score
MglATA 157 Immune Axon tract-associated microglia 510 Spp1 Rab7b Ly86 Ccl9 Gpr34 Mpeg1 Spp1: https://doi.org/10.1016/j.immuni.2018.11.004
MglCyc 158 Immune Cycling microglia 415 P2ry12 Tnfrsf1b Ly86 Fcrls Cx3cr1 Aif1 See auto- annotation. Expresses P2ry12
Mgl 159 Immune Non-cycling microglia 786 P2ry12 Gm13710 Trem2 Ccl4 Gpr34 Cd53 See auto- annotation. Expresses P2ry12
160 Immune Undefined 29 Ccl3 Hba-a2 C1qa Csf1r Nlrp3 Aif1 Doublets? Also expresses erythrocyte markers
Pvm3 161 Immune Non-cycling perivascular macrophages 1401 Ccl7 Cd209f Ccl2 Cxcl2 Ccl12 F13a1 Expresses Lyve1; see autoannotation
PvmCyc 162 Immune Cycling perivascular macrophages 199 Lyve1 Plau Mrc1 Pf4 Ms4a6c Ms4a6b Expresses Lyve1; see autoannotation
MacroE 163 Immune Early macrophage Lens of the eye (hyalocyte progenitors) 272 Rac2 Eef2kmt Spi1 Ighm Ms4a6c Ms4a6b See age distribution and auto-annotation.
164 Immune Undefined 12 Ms4a7 Rarres2 Ccl24 Pf4 Cd86 Cd14 Doublets? Fibroblast markers
Neutroph 165 Immune Infiltrating immune 11 S100a9 Ngp S100a8 Camp BC100530 Ltf Could be neutrophils based on Ngp, Camp expression
Mono 166 Immune Infiltrating immune 39 Lyz2 Sirpb1c Lgals3 Hp Ifitm6 Alox5ap Could be monocytes: expresses Ly6c2, Ccr (https://www.nature.com/articles/nn.2923), S100a9/MAC387 (https://doi.org/10.1038/srep32900)
Macro 167 Immune Infiltrating immune 53 Cd74 Rgs1 Cd52 Ccr2 Napsa Ifi27l2a Could be macrophages: expresses C1qa, C1qb
MastBaso 168 Immune Infiltrating immune 20 Cma1 Tpsb2 Cpa3 Hdc Mcpt8 Prss34 Could be mast and/or basophil cells: expresses Hdc, Gata2, Fcer1a, Kit, Il4, Il13 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405376/)
Immune1 169 Immune Infiltrating immune 35 Mpo BC035044 Ptprcap Mzb1 Arhgdib Cd79b Heterogenous cycling cells; See cycling auto-annotation
Tcell 170 Immune Infiltrating immune 19 Ltb Il22 Il7r Pdcd1 Cxcr6 Cd7 Could be T-cells: expresses Il7r, Tcrg-C1
Platelet 171 Blood Platelet Scattered 72 Ppbp Gp9 Gp5 Pf4 Treml1 Alox12 See auto-annotation
AstroF 172 Glioblast Forebrain astrocyte 821 Mt3 Gm28175 Cbs Smpdl3a Baalc Adhfe1 See tissue distribution; expresses Aqp4 and Tnc
GblF1 173 Glioblast Forebrain 147 Gm29260 Igfbp4 Rgcc Megf10 Napepld Ddah1 See tissue distribution; same clade as forebrain astrocytes
GblF2 174 Glioblast Forebrain 224 Mt3 E2f8 Ptx3 Lipg Ptprz1 Shc3 See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF3 175 Glioblast Forebrain 248 Mt3 H19 Ptx3 Lipg Aspm Cdkn3 See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF4 176 Glioblast Forebrain 252 Qrfpr Aldh1l1 Rlbp1 Slc1a3 Slc15a2 Abhd4 See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF5 177 Glioblast Forebrain 367 Gm29260 Lrp4 Htra1 Tmem132b Gm11627 Rgs20 See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF6 178 Glioblast Forebrain 211 Gm29260 Phactr2 Rlbp1 Tmem132b Gm11627 Rgs20 See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF7 179 Glioblast Forebrain 127 Ccdc80 Gas2l3 Rlbp1 Slco1c1 Ckap2 Actr3b See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
RglDF1 180 Radial glia Dorsal forebrain 113 Thrsp Pdlim3 Hopx Adamts19 Emid1 Rgs20 See tissue distribution, auto-annotation
RglDF2 181 Radial glia Dorsal forebrain 160 E330013P04Rik Gmpr Htra1 Loxl1 Mt2 Tnfrsf19 See tissue distribution, auto-annotation
RglDF3 182 Radial glia Dorsal forebrain 59 Ccdc80 Usp50 Ltbp1 Loxl1 Celsr1 Samd4 See tissue distribution, auto-annotation
RglDF4 183 Radial glia Dorsal forebrain 556 E330013P04Rik Kif24 Ltbp1 Cav1 Hes1 Csmd1 See tissue distribution, auto-annotation
RglDF5 184 Radial glia Dorsal forebrain 1052 Gm29260 Gm26604 G630016G05Rik Jph1 Thsd4 Rgs20 See tissue distribution, auto-annotation
RglDF6 185 Radial glia Dorsal forebrain 616 Dct 2810459M11Rik Cdon Mir670hg Ndrg2 Rgs20 See tissue distribution, auto-annotation
RglDF7 186 Radial glia Dorsal forebrain 922 Gm29260 Gnb2 Etl4 Jph1 Hes1 Rgs20 See tissue distribution, auto-annotation
RglDF8 187 Radial glia Dorsal forebrain 843 Gm29260 Pknox1 Etl4 Jph1 Plce1 Rgs20 See tissue distribution, auto-annotation
RglDF9 188 Radial glia Dorsal forebrain 999 Creb5 Gm19554 Ptx3 Jph1 Lix1 Bmpr1b See tissue distribution, auto-annotation
RglDF10 189 Radial glia Dorsal forebrain 1024 Nr2e1 A630089N07Rik Katnal2 Jph1 Gli3 Efnb1 See tissue distribution, auto-annotation
RglDF11 190 Radial glia Dorsal forebrain 497 Dmrt3 Dsn1 Dmrta2 Gas1 Sfrp1 Psrc1 See tissue distribution, auto-annotation
RglDF12 191 Radial glia Dorsal forebrain 830 Dmrt3 Ncapg2 Dmrta2 Lrrn1 Gli3 Ung See tissue distribution, auto-annotation
RglDF13 192 Radial glia Dorsal forebrain 965 Dmrt3 Hist1h2an Rbm20 Jph1 Hist1h1b Fut9 See tissue distribution, auto-annotation
RglDF14 193 Radial glia Dorsal forebrain 1106 Dmrt3 Msrb3 Dmrta2 Gas1 Plagl1 Tnfrsf19 See tissue distribution, auto-annotation
RglDF15 194 Radial glia Dorsal forebrain 237 E330013P04Rik Dmrt1 Rhcg Lrrn1 Tmem132c Flrt3 See tissue distribution, auto-annotation
RglCH1 195 Radial glia Cortical hem 121 Rspo1 Nim1k Rspo3 Jph1 Msx2 Bmp5 See tissue distribution, auto-annotation
RglMHB1 196 Radial glia Midbrain-hindbrain boundary Midbrain-hindbrain boundary on the hindbrain side (isthmus) 712 Fgf17 Fgf18 Cnpy1 Klhl14 Abcc4 Notum See tissue distribution, auto-annotation
RglMHB2 197 Radial glia Midbrain-hindbrain boundary Isthmus and dorsal r1 of the hindbrain 239 Hes3 Adra1a Cnpy1 Nr2f6 En2 Dtx4 See tissue distribution, auto-annotation
RglMHB3 198 Radial glia Midbrain-hindbrain boundary Caudal and dorsal midbrain (caudal m1A) 128 Hes3 Hist1h2ag Cnpy1 Efna2 Greb1 C130026L21Rik See tissue distribution, auto-annotation
RglMHB4 199 Radial glia Midbrain-hindbrain boundary Midbrain-hindbrain boundary on the midbrain side (m2) 301 Trh Wnt1 2700046A07Rik Efna2 4930426D05Rik Celrr See tissue distribution, auto-annotation
RglVM1 200 Radial glia Ventral hindbrain Basal plate of diencephalon, midbrain and hinbrain 731 Nkx2-9 Hoxb3os Nkx6-1 Adgrv1 Cmtm8 Shroom3 See tissue distribution, Hoxa2+; Nkx6-1+, Nkx2-2+, Foxa2+, Pax7-
RglVM2 201 Radial glia Ventral midbrain Midbrain alar ventrolateral plate (m1AVL) 1313 Nkx6-2 Gm2164 Pappa Igdcc3 Greb1 Wnt7a See tissue distribution, Tal2+; Nkx2-2+, Foxa2+, Nkx6-1+, Nkx6-2+
RglDM1 202 Radial glia Dorsal midbrain Alar plate of the midbrain and diencephalon 2045 Wfdc1 Gm20083 Ildr2 Zbtb16 Greb1 Dtx4 See tissue distribution, Tal2+; Pax3+, Pax7+
RglHRP 203 Radial glia Hindbrain roof plate Alar plate of the hindbrain and spinal cord 1367 Msx3 Cep135 Casz1 Wfikkn1 Fam81a Eya4 See tissue distribution, Expresses Hoxa2, Wnt1, Lmx1a
RglDH1 204 Radial glia Dorsal hindbrain Caudal part of hindbrain r1 922 Msx3 Pipox Casz1 Wfikkn1 Greb1 Dtx4 Neither midbrain- nor hindbrain-specific markers, but between hindbrain roof plate and midbrain-hindbrain boundary on t-SNE. Pax3 and Pax7.
RglDH2 205 Radial glia Dorsal hindbrain Mediolateral (basal plate?) part of hindbrain r2-r8 and spinal cord 1523 Hoxa2 Insl6 Sfrp2 Irx3 Greb1 Moxd1 See tissue distribution, Expresses Hoxa2, Pax3 and Pax7
RglMBP 206 Radial glia Midbrain basal plate Basal plate of the midbrain (m1B) 507 Lrtm1 Dmbx1 Ntn1 Sulf1 Ephb2 Stxbp6 See tissue distribution; Expresses Sim1, Foxa2; low levels of Wnt1 and Lmx1a
RglMFP 207 Radial glia Midbrain floor plate Floor plate of the midbrain (m1F) and caudal diencephalon (p1F, p2F) 342 Dkk2 2610027F03Rik Foxa1 Metrnl Cmtm8 Trabd2b See tissue distribution; Expresses Shh, Wnt1 and Lmx1a
RglHFP 208 Radial glia Hindbrain floor plate Floor plate of the hindbrain and spinal cord 265 9030622O22Rik Map3k5 Spon1 Metrnl Cmtm8 Sh2d4a See tissue distribution; Expresses Hoxb2, Shh and Foxa2
RglHypFP 209 Radial glia Hypothalamic floor-plate like Terminal hypothalamus and preoptic area (THy, PO) 327 Six6 Shh Six3 4930447C04Rik Lrp2 Mme See tissue distribution; Expresses Shh, Six3, Six6 and Rax
RglF1 210 Radial glia Forebrain Floor plate of peduncular hypothalamus (PHy) 187 Fgf10 Tbx3os1 Tbx3 Tbx3os2 Gpr50 Nkx2-4 See tissue distribution; Expresses Emx2;
RglF2 211 Radial glia Forebrain Peduncular hypothalamus (basal plate) (PHy) 59 Dkk1 Scrib Scube1 Cdh6 A630012P03Rik Gpc3 Expresses Emx2, low Wnt8b and Shh.
RglZLI 212 Radial glia Zona limitans intrathalamica Ventral and rostral diencephalon (p2 and p3) 87 Dbx1 Sim2 Barhl2 Cdh6 Tpbg Gpc3 Expresses Shh and Wnt8b, (doi: https://doi.org/10.1523/JNEUROSCI.0726-12.2013)
RglRP 213 Radial glia Roof plate Roof plate of midbrain, diencephalon and pallium 495 Galnt12 Wnt1 Wnt3a Large2 Tmem132c Stx3 Expresses Tal2, Wnt1 and Lmx1a
RglCH2 214 Radial glia Cortical hem Medial caudal pallium (cortical hem) 865 Wnt8b Qprt Rspo3 Large2 Mecom Slc25a21 Emx2, Wnt8b
RglACP 215 Radial glia Anteromedial cerebral pole Medial rostral subpallium 347 Fgf17 Cytl1 Il17rd Wfdc2 Mecom Dusp5 See tissue distribution; Six3, Fgf8; Fgf17
RglF3 216 Radial glia Forebrain Caudal subpallium (ganglionic eminence) 929 Nkx2-1 Lpl Ano1 Ccnd1 Mbip Mest See tissue distribution, Forebrain markers
RglF4 217 Radial glia Forebrain Basal plate of forebrain (p1,p2,p3,PHy,THy) 519 Nkx2-9 Gm29508 Dach2 Ptch1 Crb2 Sox2 See tissue distribution, Forebrain markers
RglF5 218 Radial glia Forebrain Subpallium 2523 Nr2e1 Slc12a7 Hmga2 Wnt5b Mecom Filip1 See tissue distribution, Forebrain markers
RglF6 219 Radial glia Forebrain Failed spatial mapping 73 Fgf8 Pask Scd1 Prtg Lrp2 Usp51 See tissue distribution, Forebrain markers
RglF7 220 Radial glia Forebrain Lateral pallium 315 Emx2 Zfp992 Dmrta2 Gpc4 Gli3 Efnb1 See tissue distribution, Forebrain markers
RglF8 221 Radial glia Forebrain Failed spatial mapping 173 Fgf17 Mir9-3hg Spry1 Gm29266 Rmst Shroom3 See tissue distribution, Forebrain markers
RglF9 222 Radial glia Forebrain 136 Fgf17 5330434G04Rik Il17rd Gm29266 Rmst Fbxw4 See tissue distribution, Forebrain markers
RglF10 223 Radial glia Forebrain 46 Fgf17 C130060K24Rik Spry1 Nr6a1os Gbe1 Dusp6 See tissue distribution, Forebrain markers
RglF11 224 Radial glia Forebrain 280 Nkx2-1 Pcdh11x Tox2 Slit2 Mbip Shc3 See tissue distribution
RglF12 225 Radial glia Forebrain 1056 Nr2e1 Lama1 Ptx3 Fgfr3 Nrarp Sema5b See tissue distribution
RglF13 226 Radial glia Forebrain 417 Gsx2 Wdr36 Rgcc Adgrv1 Napepld Sema5b See tissue distribution
RglF14 227 Radial glia Forebrain 1766 Gsx2 Nkx2-3 Ano1 Acss1 Nes Notch1 See tissue distribution
RglDD 228 Radial glia Dorsal diencephalon 719 Gm29478 Fst Barhl2 Adgrv1 Nes Cep112 See tissue distribution; Barhl2+
RglH1 229 Radial glia Mixed region Ventromedial hindbrain, spinal cord (basal plate) 959 Vit Galnt7 Wnt7b Ednrb Nrarp Adgra1 See tissue distribution
RglM1 230 Radial glia Midbrain Midbrain-hindbrain boundary diffuse 347 Helt 2610027F03Rik Cnpy1 Adgrv1 Nrarp Itgb8 See tissue distribution
RglM2 231 Radial glia Midbrain 570 Pax3 Ostm1 Pax7 Boc Irx5 Mum1 See tissue distribution
RglM3 232 Radial glia Midbrain Midbrain and diencephalon roof plate 599 Pax3 Slc45a3 Ascl1 Egfem1 Mecom Cep112 See tissue distribution
RglM4 233 Radial glia Midbrain Midbrain alar plate 822 Fam181a Cntrob Pdzph1 Boc Irx5 Mum1 See tissue distribution
RglM5 234 Radial glia Midbrain 595 Otor 2610027F03Rik Prima1 Irx6 Scml4 Efna5 See tissue distribution
RglH2 235 Radial glia Mixed region Hindbrain dorsolateral (alar plate) 636 Msx3 Dlgap2 Casz1 Boc Zic3 Dtx4 See tissue distribution
RglH3 236 Radial glia Hindbrain Hindbrain dorsolateral (alar plate) 351 Msx3 Gm31135 Glra1 Rfx4 Msx2 Id1 See tissue distribution
RglH4 237 Radial glia Hindbrain 100 Nppc Hoxc5 Glra1 Pdpn 9430041J12Rik Igsf11 See tissue distribution
Chpl1 238 Choroid plexus Choroid plexus 220 Htr2c 9130230L23Rik Kcne2 Aqp1 Tmem72 Wfikkn2 See auto-annotation
Chpl2 239 Choroid plexus Choroid plexus 494 Ttr 2900040C04Rik Gstm2 Kcnj13 Fxyd1 Folr1 See auto-annotation
Chpl3 240 Choroid plexus Choroid plexus 124 Cdc20b Slc4a5 Dynlrb2 Cfap126 Gm29538 Lrriq1 See auto-annotation
Chpl4 241 Choroid plexus Choroid plexus 11 Cdc20b Angptl2 Kcne2 Kcnj13 Clic6 Cfap45 See auto-annotation
Epen1 242 Ependymal Forebrain 204 3300002A11Rik Ccdc153 Tmem212 1700001C02Rik 1700012B09Rik Dmkn See tissue distribution, auto-annotation
Epen2 243 Ependymal Mixed region 117 Cdc20b Foxn4 Deup1 Meig1 Tekt4 Lrrc23 See tissue distribution, auto-annotation
244 Ependymal Undefined 58 Cdc20b Cybrd1 Dynlrb2 Meig1 1700007G11Rik Wdr63 See auto-annotation; some cells are enriched in neuronal markers Sgcz Cntn5 Svop Mapt Tmem130
RglSC 245 Radial glia Spinal cord 60 1700007K13Rik Fas Mia Acot5 1700007G11Rik Traf1 Expresses Hoxb8
RglEpen1 246 Radial glia Ependymal-like 91 Pdyn C230072F16Rik Clec3b Cfap52 Capsl 1700028P14Rik Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglEpen2 247 Radial glia Ependymal-like 194 P4ha3 Colgalt2 Ntn1 Cd36 Capsl Padi2 Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglEpen3 248 Radial glia Ependymal-like 91 Anxa1 Kcnj16 Lgi3 4933407L21Rik Gm31592 Tnnt3 Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglEpen4 249 Radial glia Ependymal-like 18 Anxa1 Gm13031 Lgi3 Corin Gm31592 Lama3 Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglEpen5 250 Radial glia Ependymal-like 74 Ccdc3 Prss12 Spon1 Metrnl Fgl2 Gm867 Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglHyp1 251 Radial glia Hypothalamus 19 Rax Col9a2 Adamtsl1 Zbtb7c Gstt1 Fosb Expresses Rax, Nkx2-1, Six3 (https://doi.org/10.1523/JNEUROSCI.0913-12.2013); Expresses Six6 (https://doi.org/10.1002/dvdy.20463); Expresses Rax (https://developingmouse.brain-map.org/experiment/show/100085443); Expresses Tbx3 (https://developingmouse.brain-map.org/experiment/show/100085443). It could be tanycyte related: Rax, Crym (see EPN-T auto-annotation) Col23a1, Slc16a2, Col25a1, Vcan, Frzb (DOI: 10.1016/j.celrep.2017.03.004)
RglHyp2 252 Radial glia Hypothalamus 71 Rax Cpa4 Fam183b Plcd4 Tekt1 Efhb Rax, Nkx2-1, Six3 (https://doi.org/10.1523/JNEUROSCI.0913-12.2013); Six6 (https://doi.org/10.1002/dvdy.20463); Rax (https://developingmouse.brain-map.org/experiment/show/100085443); Tbx3 (https://developingmouse.brain-map.org/experiment/show/100085443). It could be tanycyte related: Rax, Crym (see EPN-T auto-annotation) Col23a1, Slc16a2, Col25a1, Vcan, Frzb (DOI: 10.1016/j.celrep.2017.03.004)
RglHyp3 253 Radial glia Hypothalamus 51 Tgfb2 Crybb1 S100b Tst 0610040J01Rik Daam2 Mainly E16-17 and ventrothalamic, and Six6 basically confined to hypothalamus after E14.5 (https://doi.org/10.1002/dvdy.20463); Pax2 in optic chiasm, SCN (https://doi.org/10.1186/1471-213X-8-79)
RglHyp4 254 Radial glia Hypothalamus 40 Thrsp Ddo Nfatc2 Plcd4 Eno4 Ocln Mainly E17 and ventrothalamic cells, and Six6 basically confined to hypothalamus after E14.5 (https://doi.org/10.1002/dvdy.20463)
RglMHB5 255 Radial glia Late isthmic organizer 17 1500015O10Rik Pax5 Mia Enkur Capsl Fbln2 Midbrain and hindbrain, E13.5 - E16; expresses Fgf8 and Fgf17 which label isthmic organizer and velum medullare in cerebellum (https://doi.org/10.1002/dvdy.22013)
Bgl1 256 Radial glia Bergmann glia 372 Gdf10 1110032F04Rik Scube2 Abcb9 Grid2 Ctso See tissue distribution; expresses Gdf10
Bgl2 257 Radial glia Bergmann glia 220 Gdf10 Clrn1 Lmcd1 Grm3 Egfl6 Rgs20 See tissue distribution; expresses Gdf10
Bgl3 258 Radial glia Bergmann glia 183 Gdf10 Cdkn2c Scube2 Grm3 Paqr8 Emp1 See tissue distribution; expresses Gdf10
RglMix1 259 Radial glia Mixed region 76 Ttyh1 Ndufaf5 Vcam1 Adgrv1 Sox9 Kbtbd11 See tissue distribution
RglH5 260 Radial glia Hindbrain 343 Cyp26b1 Cxcr4 Fgfbp3 Ednrb 9430041J12Rik Mgst1 See tissue distribution
261 Radial glia Undefined 109 Ptf1a Aldh1l1 Prss23 Cdh20 Paqr8 Serpine2 Doublets? Radial glia markers, Rbfox3
262 Radial glia Undefined 79 Thrsp Egfr Rlbp1 Sall3 Mfge8 Rgs20 Doublets? Radial glia markers, Rbfox3
RglDH3 263 Radial glia Dorsal hindbrain 137 Fbxo2 Rnd1 AC154683.1 Gm5089 Draxin Hpgds See tissue distribution; expresses Olig3; Atoh1 expression might suggest rhombic lip
RglDH4 264 Radial glia Dorsal hindbrain 146 Fbxo2 Bmp6 Angptl1 Gm5089 Ccdc162 Hpgds See tissue distribution; expresses Olig3
RglDH5 265 Radial glia Dorsal hindbrain and spinal cord 137 Nppc Col14a1 Glis3 Cavin2 Naaa Pter See tissue distribution; expresses Hoxb8 and Nppc, which is localized in the dorsal region of the developing spinal cord and hindbrain (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2757798/)
RglDH6 266 Radial glia Dorsal hindbrain 50 Wt1 Cldn19 C1qtnf3 3100003L05Rik Myh8 Gm30191 See tissue distribution: Possibly close to the roof plate: No Wnt1 but expresses Lmx1a+, Msx1+, Pax6-, and Wt1: https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1002099
Pineal1 267 Pineal gland Pineal gland 41 Esm1 Cp Jhy Ngf Bmp4 Krt15 Expresses Bsx (doi: 10.1242/dev.163477, https://developingmouse.brain-map.org/experiment/show/100073434, doi: 10.1007/s00429-014-0740-x)
Pineal2 268 Pineal gland Pineal gland 66 Esm1 Cnmd Gm20757 Ddit4l Scara5 Kcna5 Expresses Bsx (doi: 10.1242/dev.163477, https://developingmouse.brain-map.org/experiment/show/100073434)
RglDE1 269 Radial glia Diencephalon 94 Gm29478 Nrip3 Rspo3 Gm5089 Thsd4 St3gal6 Expresses Barhl2: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5191999/
RglDE2 270 Radial glia Diencephalon 144 Gm29478 Casp2 Rspo3 Otx1 Rmst Cenpw Expresses Barhl2: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5191999/
RglCH3 271 Radial glia Cortical hem 468 Rspo2 Asb4 Rspo3 Rbm47 Clic6 Folr1 See @Hem auto-annotation; also contains choroid plexus cells
RglDERP1 272 Radial glia Diencephalic roof plate 92 Wnt9a Efcc1 Glis3 Pcp4l1 Sntb1 Flnc Expresses Wnt1;
RglDERP2 273 Radial glia Diencephalic roof plate 79 Calml4 Wnt1 Slc39a12 Pcp4l1 Naaa Kcna5 Expresses Wnt1;
HypenSCO 274 Subcommissural organ Subcommissural organ hypendymal cell 116 Spdef Sspo Ferd3l Spp2 Npsr1 Armc4 See auto-annotation
OEC1 275 Olfactory ensheathing cell Olfactory ensheathing cell 68 Prss56 Srpx Plp1 Zpld1 Cntn3 Fmo1 See auto-annotation
OEC2 276 Olfactory ensheathing cell Olfactory ensheathing cell 114 Prss56 A330076C08Rik Bricd5 Zpld1 0610040J01Rik Afap1l2 See auto-annotation
OEC3 277 Olfactory ensheathing cell Olfactory ensheathing cell 29 Prss56 Esyt3 Plp1 Cmtm5 Kctd12 Afap1l2 See auto-annotation
OEC4 278 Olfactory ensheathing cell Olfactory ensheathing cell 75 Matn4 Gm34838 Plp1 Gm4632 Sntb1 Afap1l2 with other OEC on t-SNE
Schw1 279 Schwann cell Schwann cell 123 Prss56 Gpr37 Ntn5 Aldh1a7 Slc36a2 Alox12 See auto-annotation
Schw2 280 Schwann cell Schwann cell 374 Mpz Dhrs2 Mal Art3 Plekha4 Ahr See auto-annotation
Schw3 281 Schwann cell Schwann cell 129 Sfrp5 Catsperz Egfl8 Cmtm5 Olfml2a Abca8a See auto-annotation
GblM1 282 Glioblast Midbrain 237 Tnc Gm26604 Fzd10 Lxn Hs3st3b1 Bcl2 See tissue distribution
GblM2 283 Glioblast Midbrain 739 Tnc Chrna3 Luzp2 Cldn10 Baalc Gabbr2 See tissue distribution
GblM3 284 Glioblast Midbrain 267 Shisa3 Aldh1l1 Fgfbp3 Lxn Rassf10 Adhfe1 See tissue distribution
GblF8 285 Glioblast Forebrain 275 Slc14a2 Nlrx1 Cpm Creg2 Cfap100 Adhfe1 See tissue distribution
GblF9 286 Glioblast Forebrain 120 Slc14a2 Bdh2 Cpm Trim47 Paqr8 Shc3 See tissue distribution
GblF10 287 Glioblast Forebrain 395 Mlc1 Dapk2 Dkk3 Cmtm5 Pacrg Tspan15 See tissue distribution
GblF11 288 Glioblast Forebrain 273 Mlc1 Igsf1 Gm17455 Enkur Gm11992 Traf1 See tissue distribution
GblF12 289 Glioblast Forebrain 283 Clu Cln3 Dbx2 Ramp1 Slc25a18 Tmem100 See tissue distribution
GblMix1 290 Glioblast Mixed region 136 Aldoc N4bp2l1 Slc7a10 Gdpd2 Slc25a18 Cnp See tissue distribution
GblH1 291 Glioblast Hindbrain 561 Aldoc Fam69c Fgfbp3 Emp2 Slc25a18 Paqr7 See tissue distribution
GblH2 292 Glioblast Hindbrain 405 Slc6a11 Rrnad1 Slc7a10 Emp2 Slc6a9 Paqr7 See tissue distribution
GblH3 293 Glioblast Hindbrain 165 Aqp4 Tmbim1 Ppp1r3c Ramp1 Prss35 Tmem100 See tissue distribution
GblH4 294 Glioblast Hindbrain 267 Nppc 1110032F04Rik Hopx Gabrb1 Grm7 Paqr7 See tissue distribution
GblH5 295 Glioblast Hindbrain 293 Nppc Dnah6 Angptl1 Gabrb1 Naaa Dnaaf3 See tissue distribution
GblH6 296 Glioblast Hindbrain 195 Nppc Cyp39a1 Nid1 Ednrb Naaa Afap1l2 See tissue distribution
GblH7 297 Glioblast Hindbrain 248 Pgm5 Sostdc1 Luzp2 Gabrb1 Dhrs3 Acot1 See tissue distribution
AstroMix1 298 Glioblast Mixed region astrocytes 164 Aqp4 Lypd1 Hopx Inpp5j Tmie Selenom Expresses high levels of Aqp4, Gfap
AstroMix2 299 Glioblast Mixed region astrocytes 528 Gfap Pla2g3 Hopx Sparcl1 Cidea Adhfe1 Expresses high levels of Aqp4, Gfap
AstroMix3 300 Glioblast Mixed region astrocytes 309 Slc6a11 Mcrip2 Dbx2 Fam212b Slc6a9 Etv4 Expresses high levels of Agt
AstroMix4 301 Glioblast Mixed region astrocytes 1064 Slc6a11 Trim62 Dbx2 Cldn10 Slc6a9 Atp1a2 Expresses high levels of Agt
AstroMix5 302 Glioblast Mixed region astrocytes 451 Agt Il33 Slc7a10 Cldn10 Slc6a9 Cyp2j9 Expresses high levels of Agt
AstroH 303 Glioblast Hindbrain 554 Pla2g7 AI464131 Adamtsl1 Cldn10 Slc6a9 Cyp2j9 See tissue distribution
AstroSC1 304 Glioblast Spinal cord 92 Ctnna3 Lcat Hopx Cldn10 Slc6a9 Atp1a2 Expresses Hoxb8
AstroSC2 305 Glioblast Spinal cord 104 Ctnna3 Kcnmb4os2 Hopx Creg2 Kcnmb4 Adhfe1 Expresses Hoxb8
PreOPC1 306 Glioblast PreOPC 225 Ntsr2 Gm29683 Dbx2 Fzd9 Mfge8 March3 Adjacent to 306 on t-SNE
PreOPC2 307 Glioblast PreOPC 608 Olig1 Stard9 Olig2 Crlf1 Sox8 Me3 Rgl2c auto-annotation
PreOPC3 308 Glioblast PreOPC 113 Olig1 Gm35040 Olig2 Crlf1 Cbr3 Ttpa Adjacent to 306 on t-SNE; Olig1/Olig2 enriched
GblO1 309 Glioblast Mixed region 852 Olig1 Cdc42ep1 Olig2 Fam212b Cbr3 Etv4 See tissue distribution
GblO2 310 Glioblast Mixed region 723 Timp4 Cenpi Acsbg1 Ramp1 Cbr3 Etv4 See tissue distribution
OPC1 311 Glioblast Undefined 20 Olig1 Caskin2 Lhfpl3 Lnx1 Dock10 Plekhb1 Doublets? Relatively high score, OPC and @AEP auto-annotation
OPC2 312 Oligodendrocyte Undefined 15 Olig1 Gfod1 Olig2 Pdgfra Xylt1 Me3 Doublets? @GABA auto-annotation
OPC3 313 Oligodendrocyte Oligodendrocyte precursor cell 237 Gpr17 Cdkn2c Olig2 Pdgfra Cspg4 Omg See auto-annotation
OPC4 314 Oligodendrocyte Oligodendrocyte precursor cell 302 Matn4 Sstr1 Lhfpl3 Pdgfra Cspg4 Omg See auto-annotation
OPC5 315 Oligodendrocyte Oligodendrocyte precursor cell 922 Scrg1 Col19a1 Lhfpl3 Pdgfra Cspg4 Omg See auto-annotation
OPC6 316 Oligodendrocyte Oligodendrocyte precursor cell 241 Olig1 Tmem255b Pllp Pdgfra A930009A15Rik Omg See auto-annotation
OPC7 317 Oligodendrocyte Oligodendrocyte precursor cell 288 Olig1 Rph3a Olig2 Prkcq A930009A15Rik Omg See auto-annotation
COP1 318 Oligodendrocyte Committed oligodendrocyte precursor 84 Gpr17 Amz1 Lims2 Tnr Gpr37l1 Neu4 See auto-annotation
COP2 319 Oligodendrocyte Committed oligodendrocyte precursor 78 Enpp6 Mro Mbp 9630013A20Rik Fa2h Cnp See auto-annotation
Oligo 320 Oligodendrocyte Oligodendrocyte 36 Enpp6 Gjc3 Mbp Mag Ugt8a Plxnb3 See auto-annotation
NblM1 321 Neuroblast Midbrain GABAergic 342 Tal2 Gpr137c Pnoc Cacna2d3 Clvs2 Tenm3 See tissue distribution, auto-annotation
NblM2 322 Neuroblast Midbrain GABAergic 551 Tal2 Gm10605 Pnoc Otx1 Clvs2 Nav2 See tissue distribution, auto-annotation
NblM3 323 Neuroblast Midbrain Midbrain alar ventrolateral plate (m1AVL) 132 Tal2 Fam214a Nrtn Stk33 Tmem38b Nav2 See tissue distribution
NblM4 324 Neuroblast Midbrain 57 Tal2 Bcas1 Ascl1 Sdk2 Tmem38b Tenm3 See tissue distribution
NblF1 325 Neuroblast Forebrain glutamatergic Sparse PHy 58 Isl1 Pkib Cdh7 3632451O06Rik Cdkn1c Syt1 See tissue distribution, auto-annotation
NblF2 326 Neuroblast Forebrain 573 Dlk1 Crb1 G0s2 Zc3h12c Btg2 Srrm4 See tissue distribution
NblF3 327 Neuroblast Forebrain GABAergic 217 Gsx1 Crb1 St18 Stk33 Pak3 Peg3 See tissue distribution, auto-annotation. Expresses Gabaergic Dlxs
NblF4 328 Neuroblast Forebrain GABAergic 398 Dlx1 Smox Dlx5 Stk33 Myt1 Dclk2 See tissue distribution, auto-annotation. Expresses Gabaergic Dlxs
NblF5 329 Neuroblast Forebrain GABAergic 176 Gsx1 Rgs8 D030055H07Rik Stk33 Cdkn1c Dcc See tissue distribution, auto-annotation. Expresses Gabaergic Dlxs
NblF6 330 Neuroblast Forebrain GABAergic Mantle zone of preoptic area and subpallium, diffuse first branchail arch 79 Sp9 Arid3a Dlx5 Kcnh2 Phf21b Fbrsl1 See tissue distribution, auto-annotation
CR1 331 Neuroblast Cajal-Retzius 37 Mcidas 1600014C10Rik Ccno Cav2 Pidd1 Lrriq1 See auto-annotation
CR2 332 Neuroblast Cajal-Retzius 124 Mcidas Dmrta2os Ccno Cav2 Agbl4 Lrriq1 See auto-annotation
CR3 333 Neuroblast Cajal-Retzius 28 Mcidas Insm2 Ccno E2f7 Myb Stox1 See auto-annotation
NblMN1 334 Neuroblast Motor neuron Hinbrain r4 ventral 161 Phox2a Rpusd3 Ppp1r17 Fam163a Snx18 Gamt See auto-annotation
NblMN2 335 Neuroblast Motor neuron Hindbrain and spinal cord ventral 107 Phox2a Halr1 Nkx6-1 Kcnh2 Nhs Trim9 See auto-annotation
NblM5 336 Neuroblast Midbrain Midbrain roof plate, subpallium ganglionic eminence 177 Neurog1 Wnt10a Onecut2 Prdm12 Col16a1 Tnnt1 See tissue distribution
NblM6 337 Neuroblast Midbrain Failed spatial mapping 125 Cck Ccdc182 Plk3 Sapcd1 A330009N23Rik Jag1 See tissue distribution
NblM7 338 Neuroblast Midbrain Midbrain diencephalon roof plate 154 Neurog1 Nhej1 Onecut2 Tmem159 Sgpp2 Tnnt1 See tissue distribution
NblMix2 339 Neuroblast Mixed region Failed spatial mapping 343 Neurog1 Fndc3c1 Glra1 Cdc25b Spsb4 5730559C18Rik See tissue distribution
NblH1 340 Neuroblast Hindbrain Hindbrain dorsal (alar) 244 Atoh1 Ccdc182 Wnt3a Iqck Nkd1 Gprc5b See tissue distribution
NblH2 341 Neuroblast Hindbrain Hindbrain ventral (basal) 184 Vsx1 Wdr66 Mybl1 Cdh20 Slc35d2 Crybg3 See tissue distribution
NblMix3 342 Neuroblast Mixed region Failed spatial mapping 45 Vsx1 Eya2 Alpl Hspa2 C330027C09Rik Notch1 See tissue distribution
NblH3 343 Neuroblast Hindbrain Failed spatial mapping 153 Hes2 4930557F10Rik Alpl Hspa2 Rsph1 Kif18a See tissue distribution
NblM7 344 Neuroblast Midbrain 773 Dbx1 Pkib Rassf4 Sdk2 Nuak2 Dcc See tissue distribution
NblM8 345 Neuroblast Midbrain 228 Helt Pkib Gadd45g Otx2 Nuak2 Dlgap5 See tissue distribution
NblM9 346 Neuroblast Midbrain Midbrain basal plate 91 Helt Foxa2 Nkx6-1 Cdc25b Spsb4 Heg1 See tissue distribution
NblM10 347 Neuroblast Midbrain Diencephalon basal plate 148 9030622O22Rik Pik3c2b Btbd17 Sulf1 Spsb4 Heg1 See tissue distribution
NblH4 348 Neuroblast Hindbrain Hindbrain and spinal cord ventral (basal) 111 Neurog1 Lsp1 Plk3 Gfra1 Numbl Cog1 See tissue distribution
NblMix4 349 Neuroblast Mixed region Failed spatial mapping 196 Neurog1 Gm20083 Plk3 Galnt18 Phldb2 Crybg3 See tissue distribution
NblH5 350 Neuroblast Hindbrain Hindbrain and spinal cord ventral (basal) 115 Neurog1 Cxcl14 Glra1 Pgpep1 Spsb4 Iqgap2 See tissue distribution
NblH6 351 Neuroblast Hindbrain Hindbrain and spinal cord dorsolateral 129 Msx3 Gm12236 Glra1 Sapcd1 Txlnb Nckap5 See tissue distribution
NblH7 352 Neuroblast Hindbrain Hindbrain and spinal cord dorsolateral 156 Ptf1a Akr1b8 Nphs1 Cdc25b Spsb4 Gprc5b See tissue distribution
NblH8 353 Neuroblast Hindbrain Medulla dorsolateral 177 Kirrel2 Prdm13 Nphs1 Wnt5a Rgs3 Gprc5b See tissue distribution
NblH9 354 Neuroblast Hindbrain 225 Msx3 Zfp37 Glra1 Miat Chrna4 Adgrg1 See tissue distribution
NblF7 355 Neuroblast Forebrain 95 Gm29478 Rgs13 AC154683.1 Clybl Wscd1 Dcc See tissue distribution
NblMix5 356 Neuroblast Mixed region 142 Neurog2 Rgs13 Grasp Zc3h12c Nuak2 Tmem2 See tissue distribution
NblF8 357 Neuroblast Forebrain 179 Olig3 Brip1 Prkg2 Zc3h12c E2f1 Eml5 See tissue distribution
NblF9 358 Neuroblast Forebrain glutamatergic Pallium dorsal lateral 71 Neurog1 Mamld1 Kifc1 Sapcd2 Ube2c Ccnb1 See tissue distribution, auto-annotation
NblF10 359 Neuroblast Forebrain glutamatergic 220 Gmnc Dll1 Rspo3 Fam110a Hes6 Lzts1 See tissue distribution, auto-annotation
NblF11 360 Neuroblast Forebrain glutamatergic 33 Neurog1 Hs3st3a1 Gadd45g Zc3h12c Btg2 Lzts1 See tissue distribution, auto-annotation
NblH10 361 Neuroblast Hindbrain 172 Gata2 Insm2 Fam183b Gm4675 Rsph1 Pcdh17 See tissue distribution, auto-annotation
NblMix6 362 Neuroblast Mixed region Hindbrain and spinal cord ventral 50 3110035E14Rik 2610008E11Rik St18 Sdk2 Sdccag8 Vat1l See tissue distribution, auto-annotation
NblH11 363 Neuroblast Hindbrain Failed spatial mapping 159 Vsx2 Insc Nkx6-1 Gm4675 Sox21 Rnd3 See tissue distribution, auto-annotation
NblMix7 364 Neuroblast Mixed region glutamatergic Lateral preoptic area 127 Sim1 S100a16 Mfng Clvs1 Cacna2d1 Serping1 See tissue distribution, auto-annotation
NblM11 365 Neuroblast Midbrain glutamatergic Midbrain vetral, lateral preoptic area 169 Sim1 Insm1 2700046A07Rik Clvs1 Myo16 Elavl4 See tissue distribution, auto-annotation
NblM12 366 Neuroblast Midbrain glutamatergic Ventral diencephalon 142 9030622O22Rik Hepacam2 Tmem163 Pxylp1 Apcdd1 Chn2 See tissue distribution, auto-annotation
NblH12 367 Neuroblast Hindbrain Ventral hindbrain 46 Phox2b Bcas1 Crabp1 Lmx1b Chrna4 Adgrg1 See tissue distribution
NblH13 368 Neuroblast Hindbrain Hindbrain lateral r4 67 Tlx3 Nexn Crabp1 Sapcd1 Chrna4 Gamt See tissue distribution
NblH14 369 Neuroblast Hindbrain Hindbrain lateral 174 Otp Insc Lhx5 Gfra1 Csrp1 Serping1 See tissue distribution
NblH15 370 Neuroblast Hindbrain glycinergic Hindbrain ventrolateral 120 Gm20649 Qsox1 Crabp1 Hoxb2 Chrna4 Greb1l See tissue distribution, auto-annotation
NblM13 371 Neuroblast Midbrain Midbrain dorsal, hindbrain lateral 132 Dbx1 Grm4 Onecut2 A830018L16Rik A330009N23Rik Gamt See tissue distribution
NblH16 372 Neuroblast Hindbrain Failed spatial mapping 238 Atoh1 Cdkn2b Rassf4 Gm16701 1700003F12Rik Fam78b See tissue distribution
NblH17 373 Neuroblast Hindbrain Hindbrain dorsal 159 Atoh1 Stpg1 Rassf4 Rab15 Nkd1 Mtcl1 See tissue distribution
NblF12 374 Neuroblast Forebrain Subpallium lateral 95 Atp8b4 Kif19a Art1 Art5 Ankrd2 Fam107a See tissue distribution; could be olfactory sensory neurons based on Lhx2, Fezf1, Uncx, Krt8
NblSN1 375 Neuroblast Sensory neuron Cranial ganglion 125 Ppp1r14a Ccdc88b Six1 Bdnf A330009N23Rik Dcdc2a See tissue distribution; Expresses Tlx2, Six1; could be vestibulo-acoustic ganglion based on Fgf10 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6772592/), Fbxo2 (doi: 10.3389/fncel.2015.00079), Gata3 and Bhlhe22 (doi: 10.1523/JNEUROSCI.4703-12.2013)
NblSN2 376 Neuroblast Sensory neuron Cranial ganglion 109 Tlx2 Fanca Synpo Mreg Gm35696 Coro2a See tissue distribution; Expresses Tlx2, Six2
NblSN3 377 Neuroblast Sensory neuron Cranial ganglion 232 Sct Bik Tuba4a Mreg Atp6v1c2 Egflam See tissue distribution; Expresses Tlx2, Six3; could be trigeminal based on Otx2, Prrxl1, Prdm12 (doi: 10.1186/s13064-016-0057-y)
NblSN4 378 Undefined Sensory neuron Failed spatial mapping 169 Tlx2 Kif2c Dpysl4 Mreg Tpm2 Gamt No markers on heatmap
NblSN5 379 Neuroblast Sensory neuron Ventrolateral spinal cord 43 Tlx2 D930020B18Rik Gm7271 Mreg Acad10 Serpinb8 See tissue distribution; Expresses Tlx2, Six3; could be trigeminal based on Otx2, Prrxl1, Prdm12 (doi: 10.1186/s13064-016-0057-y)
NblSN6 380 Neuroblast Sensory neuron Cranial ganglion 92 Tlx2 Gm4166 Gm7271 Mreg Gm16104 Coro2a See tissue distribution; Expresses Tlx2, Six3; could be trigeminal based on Otx2, Prrxl1, Prdm12 (doi: 10.1186/s13064-016-0057-y)
NblSN7 381 Neuroblast Sensory neuron Cranial ganglion 97 Isl2 Ccer2 Synpo Mreg Cerkl Cryba1 See tissue distribution; Expresses Tlx2, Six3; could be trigeminal or acoustic based on Fgf10 https://doi.org/10.1371/journal.pone.0030677
NblSN8 382 Neuroblast Sensory neuron Cranial ganglion 23 Tlx2 Prox2 Gm7271 Dbh Cerkl Tspan2os See tissue distribution; Expresses Tlx2, Six3; could be epibranchial based on Phox2a, Prox2, Ret (https://www.jneurosci.org/content/16/23/7649)
Nbl383 383 Neuroblast Hindbrain Failed spatial mapping 11 Lhx4 St8sia3os Ppp1r17 Frmpd1 Parm1 Angpt2 See tissue distribution
Nbl384 384 Neuroblast Motor neuron Ventral hindbrain 103 Gnat3 Insc Tbx20 Fam163a Prickle1 Mcc See tissue distribution, auto-annotation
Nbl385 385 Neuroblast Motor neuron Ventral hindbrain, spinal cord 22 Lhx4 Sema3d Tbx20 Pnlip Arhgap36 Kcnab1 See tissue distribution, auto-annotation
Nbl386 386 Neuroblast Midbrain glutamatergic Failed spatial mapping 157 Cplx3 Prss12 Onecut2 Prdm12 Npr2 Gamt See tissue distribution, auto-annotation
Nbl387 387 Neuroblast Midbrain glutamatergic Midbrain 197 Onecut3 E130006D01Rik Onecut2 Tppp3 Hspa12a Rem2 See tissue distribution, auto-annotation
Nbl388 388 Neuroblast Midbrain glutamatergic Midbrain 203 Bhlhe23 Cpne8 Onecut2 Tppp3 Esyt1 Crip1 See tissue distribution, auto-annotation
Nbl389 389 Neuroblast Sensory neuron Cranial ganglion (trigeminal) 162 Isl2 Pappa2 Ppp1r17 Scn9a S100a10 Crip1 See auto-annotation
Nbl390 390 Neuroblast Midbrain glutamatergic Failed spatial mapping 138 Pitx2 Lypd1 Gm28526 Lef1 Bmp7 Enpp2 See tissue distribution, auto-annotation
Nbl391 391 Neuroblast Midbrain glutamatergic Failed spatial mapping 57 Gm26872 Shisa6 Gm28526 3632451O06Rik Dock5 Rap1gap2 See tissue distribution, auto-annotation
Nbl392 392 Neuroblast Midbrain glutamatergic Failed spatial mapping 221 Gm26872 Enpp3 Ppp1r17 3632451O06Rik Dock5 Rap1gap2 See tissue distribution, auto-annotation
Nbl393 393 Neuroblast Hindbrain glutamatergic 267 C1ql4 Chrdl1 Evx2 Nrn1 Lrrtm3 Trp53i11 See tissue distribution, auto-annotation
Nbl394 394 Neuroblast Hindbrain glutamatergic 483 Robo3 Cpsf7 Nefl Hoxb2 Rgmb Ina See tissue distribution, auto-annotation
Nbl395 395 Neuroblast Hindbrain glutamatergic 254 Evx1os Il17ra Adcyap1 Gm16701 Rgmb Fam78b See tissue distribution, auto-annotation
Nbl396 396 Neuroblast Hindbrain glutamatergic Hindbrain r4 59 Grem2 Hoxc5 Hoxb4 3632451O06Rik Hoxd3 Fam78b See tissue distribution, auto-annotation
Nbl397 397 Neuroblast Hindbrain glutamatergic 71 Phox2b 9330182L06Rik Nefm Lmx1b Slc17a6 Gcnt2 See tissue distribution, auto-annotation
Nbl398 398 Neuroblast Hindbrain glutamatergic Hindbrain 103 Phox2b Gm49144 Nefm Lmx1b Nkain4 Rara See tissue distribution, auto-annotation
Nbl399 399 Neuroblast Hindbrain glutamatergic Strong staining of unknown caudal structure 155 Nrgn Tlx1 C130021I20Rik Lmx1b Peg10 Racgap1 See tissue distribution, auto-annotation
Nbl400 400 Neuroblast Hindbrain glutamatergic 267 Tlx3 Gm44593 C130021I20Rik Lmx1b Cblb Garem2 See tissue distribution, auto-annotation
Nbl401 401 Neuroblast Spinal cord glutamatergic 262 Hoxb6 Klhl35 Hoxb4 Lmx1b Rgmb Slc8a2 Hoxb8, auto-annotation
Nbl402 402 Neuroblast Hindbrain GABAergic 287 Robo3 Gal3st3 Gm26688 Pid1 Rgmb Fam43a See tissue distribution, auto-annotation
Nbl403 403 Neuroblast Hindbrain GABAergic 227 Tfap2a Adra1a Nkain1 Igsf8 Rgs3 Lzts1 See tissue distribution, auto-annotation
Nbl404 404 Neuroblast Hindbrain glycinergic 259 Robo3 Tcf15 Hoxb4 Igsf8 Tspan18 Srrm3 See tissue distribution, auto-annotation
Nbl405 405 Neuroblast Hindbrain glycinergic 297 Robo3 Sema4b Hoxb4 Mxra7 Rcan2 Rara See tissue distribution, auto-annotation
Nbl406 406 Neuroblast Hindbrain glycinergic 115 Slc6a5 Homer2 Lhx5 Scrt2 Rcan2 Slc37a1 See tissue distribution, auto-annotation
Nbl407 407 Neuroblast Hindbrain glycinergic 291 Otp Klhl35 Lhx5 Gfra1 Enox2 Rnd3 See tissue distribution, auto-annotation
Nbl408 408 Neuroblast Hindbrain glycinergic Ventrolateral hindbrain, spinal cord 319 Otp Dnajb5 Lhx1os Gfra1 Rgmb Tmem169 See tissue distribution, auto-annotation
Nbl409 409 Neuroblast Hindbrain GABAergic Lateral hindbrain, spinal cord 98 Otp 2610027F03Rik Lhx1os Syndig1 Enox2 Klhl32 See tissue distribution, auto-annotation
Nbl410 410 Neuroblast Midbrain 184 Cplx3 Gm44593 Gm26688 Mab21l1 Pou3f4 Lzts1 See tissue distribution
Nbl411 411 Neuroblast Midbrain 195 Shox2 Crebrf Prmt8 Ebf3 2510009E07Rik Dcc See tissue distribution
Nbl412 412 Neuroblast Midbrain glutamatergic 249 Shox2 Tspan11 Ebf2 Gfra1 Cdkn1c Efna5 See tissue distribution, auto-annotation
Nbl413 413 Neuroblast Midbrain glutamatergic 373 Bhlhe23 Thrb Pou4f1 Cntn2 Fbxl17 F13a1 See tissue distribution, auto-annotation
Nbl414 414 Neuroblast Midbrain glutamatergic 63 D130079A08Rik Abcd2 Barhl2 Mab21l1 Fzd1 Klhl13 See tissue distribution, auto-annotation
Nbl415 415 Neuroblast Midbrain glutamatergic 628 Bhlhe23 Kcnip3 Onecut2 Vav3 Fzd1 Srrm3 See tissue distribution, auto-annotation
Nbl416 416 Neuroblast Midbrain glutamatergic 23 Gm26872 Pax5 Barhl2 Gfra1 5930412G12Rik Parvb See tissue distribution, auto-annotation
Nbl417 417 Neuroblast Midbrain glutamatergic 1094 Pou4f3 Lhx9 Pou4f1 Mab21l1 Gpr156 Igfbpl1 See tissue distribution, auto-annotation
Nbl418 418 Neuroblast Midbrain glutamatergic 316 Asic2 Ypel2 Adcyap1 Cntn2 Chgb Klhl13 See tissue distribution, auto-annotation
Nbl419 419 Neuroblast Midbrain glutamatergic 386 Tfap2b Sertad4 Lgals7 Mab21l1 Rtn4rl1 F13a1 See tissue distribution, auto-annotation
Nbl420 420 Neuroblast Midbrain glutamatergic 730 Tfap2b Foxb1 Lgals7 Ntng2 Pcsk2 Cntnap2 See tissue distribution, auto-annotation
Nbl421 421 Neuroblast Thalamus glutamatergic 205 Gbx2 Nme2 Zic5 Dmrtb1 Slc17a6 Rhou See tissue distribution, auto-annotation
Nbl422 422 Neuroblast Thalamus glutamatergic 235 Gbx2 Mapk11 Sema5a Pou2f2 Rnf220 Fam78b See tissue distribution, auto-annotation
Nbl423 423 Neuroblast Thalamus glutamatergic 198 Gbx2 Wscd2 Prkg2 Slc1a2 Slc17a6 Cep112 See tissue distribution, auto-annotation
Nbl424 424 Neuroblast Thalamus glutamatergic 165 Gbx2 Map3k20 Prkg2 Rtkn2 Arhgap18 Cdo1 See tissue distribution, auto-annotation
Nbl425 425 Neuroblast Neuronal intermediate progenitor 11 2600014E21Rik Lockd Palmd Zhx2 Pou3f3 Rasgef1b See tissue distribution, auto-annotation
Nbl426 426 Neuroblast Forebrain glutamatergic 493 Unc5d Gm20687 Kcnn3 Foxg1 Nrp1 Cttnbp2 See tissue distribution, auto-annotation
Nbl427 427 Neuroblast Forebrain glutamatergic 1242 Unc5d Focad Cdh10 Galnt17 Nrg1 Cttnbp2 See tissue distribution, auto-annotation
Nbl428 428 Neuroblast Neuronal intermediate progenitor 1345 Eomes Stk32a Cdh8 Plcb1 Nrg1 Carmil3 See tissue distribution, auto-annotation
Nbl429 429 Neuroblast Forebrain glutamatergic 293 Gm28050 Hs3st1 Sorl1 Negr1 Tmem108 Pam See tissue distribution, auto-annotation
Nbl430 430 Neuroblast Neuronal intermediate progenitor 174 Nhlh1 Sirt5 Dubr Necab3 Prdm8 Nfia See tissue distribution, auto-annotation
Nbl431 431 Neuroblast Forebrain glutamatergic 287 Tbr1 Tbk1 Cabp1 Rnd2 Prdm8 Ccser1 See tissue distribution, auto-annotation
Nbl432 432 Neuroblast Forebrain glutamatergic 1936 Tiam2 Adamtsl3 Neurod6 Rnd2 Zbtb18 E330009J07Rik See tissue distribution, auto-annotation
Nbl433 433 Neuroblast Neuronal intermediate progenitor 629 Eomes Ttc39b Plcxd2 Mfap4 Sez6 Kif21b See tissue distribution, auto-annotation
Nbl434 434 Neuroblast Neuronal intermediate progenitor 1184 Sstr2 A930024E05Rik Neurod6 Slc30a10 Ulk4 Carmil3 See tissue distribution, auto-annotation
Nbl435 435 Neuroblast Forebrain glutamatergic 20 Sstr2 4930545L23Rik Plcxd2 Flrt1 Ttbk1 Slc44a5 See tissue distribution, auto-annotation
Nbl436 436 Neuroblast Neuronal intermediate progenitor 499 Eomes Rftn2 Ust Kif26b Nrg1 Snhg18 See tissue distribution, auto-annotation
Nbl437 437 Neuroblast Neuronal intermediate progenitor 1036 Eomes Cdc14a Rhbdl3 Kif26b Celsr1 E330009J07Rik See tissue distribution, auto-annotation
Nbl438 438 Neuroblast Neuronal intermediate progenitor 475 Neurog2 Slc16a14 Rhbdl3 Lypd6 Celsr1 Lpar1 See tissue distribution, auto-annotation
Nbl439 439 Neuroblast Neuronal intermediate progenitor 453 Neurog2 Dleu7 Rhbdl3 Tmem132b Celsr1 Fam210b See tissue distribution, auto-annotation
Nbl440 440 Neuroblast Neuronal intermediate progenitor 446 Neurog1 Lrrc1 Gadd45g Zc3h12c E2f1 Clspn See tissue distribution, auto-annotation
Nbl441 441 Neuroblast Neuronal intermediate progenitor 484 Eomes Ncapg2 Neil3 Tcf19 Hist1h2ae Esco2 See tissue distribution, auto-annotation
Nbl442 442 Neuroblast Neuronal intermediate progenitor 261 Eomes Depdc1b Pif1 Mxd3 Spc25 Knl1 See tissue distribution, auto-annotation
Nbl443 443 Neuroblast Neuronal intermediate progenitor 643 Eomes Hyls1 Gadd45g Troap Arhgap11a Cenpe See tissue distribution, auto-annotation
Nbl444 444 Neuroblast Neuronal intermediate progenitor 204 Eomes Fopnl Hist1h2bc Rnd2 Ube2c Cenpa See tissue distribution, auto-annotation
Nbl445 445 Neuroblast Neuronal intermediate progenitor 266 Eomes Rab39b Rwdd3 Clvs1 Rbfox3 Lzts1 See tissue distribution, auto-annotation
Nbl446 446 Neuroblast Neuronal intermediate progenitor 327 Eomes Sat2 Gm11266 Mfap4 Gsap Nfia See tissue distribution, auto-annotation
Nbl447 447 Neuroblast Neuronal intermediate progenitor 180 Nhlh1 9630028B13Rik Dmrta1 Gadd45a Efna3 Pgap1 See tissue distribution, auto-annotation
Nbl448 448 Neuroblast Undefined 12 Sstr2 Rbm24 Cdc25c Nfic Ttk Espl1 Doublets? Relatively high score
Nbl449 449 Neuroblast Forebrain GABAergic Subpallium 324 Gsx2 Rgs8 Rgs16 Depdc7 Hes6 Myo10 See auto-annotation, tissue distribution
Nbl450 450 Neuroblast Forebrain GABAergic 209 Gsx2 Dusp10 Ascl1 Stk33 E2f1 Ccne2 See auto-annotation, tissue distribution
Nbl451 451 Neuroblast Forebrain GABAergic 305 Dlx2 E2f2 Rbm3 Uba52 Ccnd2 Slbp See auto-annotation, tissue distribution
Nbl452 452 Neuroblast Forebrain GABAergic 1009 Dlx2 Rbl1 Arx Rffl Gm10282 Atad2 See auto-annotation, tissue distribution
Nbl453 453 Neuroblast Forebrain 192 Gsx2 Egfr Ascl1 Lima1 Efhd2 Rnf180 See tissue distribution
Nbl454 454 Neuroblast Forebrain GABAergic 370 Dlx6os1 Tmem98 Arx Zswim5 Grik3 Dclk2 See auto-annotation, tissue distribution
Nbl455 455 Neuroblast Forebrain GABAergic 566 Dlx6os1 Arhgef39 Dlx5 Cep55 Aspm Sgo2a See auto-annotation, tissue distribution
Nbl456 456 Neuroblast Forebrain GABAergic 610 Gsx2 Gpbp1l1 Dlx5 Stk33 Aspm Pbk See auto-annotation, tissue distribution
Nbl457 457 Neuroblast Forebrain GABAergic 736 Dlx6os1 Sall1 Dlx5 Gm13889 Ccnd2 Nusap1 See auto-annotation, tissue distribution
Nbl458 458 Neuroblast Forebrain GABAergic 1053 B020031H02Rik Arl4d Dlx5 Gm13889 Ccnd2 Gm14964 See auto-annotation, tissue distribution
Nbl459 459 Neuroblast Hindbrain 29 Prelp Dll3 Gadd45g Sdk2 Rbfox3 Rnasel See tissue distribution
Nbl460 460 Neuroblast Hindbrain 122 Msx3 Adcy2 Glra1 Pdpn Nrarp Sema5b See tissue distribution; cerebellar progenitor auto-annotation
Nbl461 461 Neuroblast Hindbrain 91 Kirrel2 Sh3bp4 Nphs1 Pgpep1 Hes6 Chst15 See tissue distribution; cerebellar progenitor auto-annotation
Nbl462 462 Neuroblast Hindbrain 111 Ptf1a Adgrg6 Nphs1 Hhip Grid2 Meis1 See tissue distribution; cerebellar progenitor auto-annotation
Nbl463 463 Neuroblast Hindbrain 164 Ptf1a Ass1 Nphs1 Col28a1 Grid2 Mgst1 See tissue distribution; cerebellar progenitor auto-annotation
Nbl464 464 Neuroblast Hindbrain 11 Kirrel2 Ncdn Prss23 Nbl1 Wscd1 Vps37b See tissue distribution; cerebellar progenitor auto-annotation
Nbl465 465 Neuroblast Hindbrain glycinergic 244 Pax2 Pde3a Slc30a3 Abat Kcnb2 Afap1 See tissue distribution, auto-annotation
Nbl466 466 Neuroblast Hindbrain glycinergic 90 Pax2 Olfml2b Gm38399 Tbc1d4 Masp1 Nanos1 See tissue distribution, auto-annotation
Nbl467 467 Neuroblast Hindbrain glycinergic 39 Optc Ccna1 Gm38399 Mxd3 Aspm Hmmr See tissue distribution, auto-annotation
Nbl468 468 Neuroblast Undefined 72 Kcnj6 Setd7 AC154683.1 Ryr2 Sez6l Gm20696 Doublets? High doublet score
Nbl469 469 Neuroblast Mixed region 323 Hs3st5 Rprd1b AC154683.1 Pde1c Carnmt1 Nav2 See tissue distribution
Nbl470 470 Neuroblast Mixed region glutamatergic 231 Neurog2 Mccc2 Rhbdl3 Mdga1 Rbfox3 Nfia See auto-annotation, tissue distribution
Nbl471 471 Neuroblast Mixed region glutamatergic 22 Nhlh1 Pygo1 Reln Mdga1 Syn2 Nfia See auto-annotation, tissue distribution
Nbl472 472 Neuroblast Mixed region glutamatergic 28 Sim1 E130114P18Rik Nxph4 Zmat4 Shf Slc22a15 See auto-annotation, tissue distribution
Nbl473 473 Neuroblast Hindbrain glutamatergic 127 Hoxc4 Wrnip1 Hoxb4 Tmem178 Fgf9 Ddx31 See auto-annotation, tissue distribution
Nbl474 474 Neuroblast Hindbrain glutamatergic 381 Robo3 Sertm1 Hoxb3 Klhl1 Hoxd3 Elmo1 See auto-annotation, tissue distribution
Nbl475 475 Neuroblast Hindbrain glutamatergic 278 Ren1 Tprn Hoxb3 Pde1c Eva1c Fam78b See auto-annotation, tissue distribution
Nbl476 476 Neuroblast Hindbrain glutamatergic 111 Atoh1 Arhgef10l Rassf4 Hsd11b2 Sema7a Fam78b See auto-annotation, tissue distribution
Nbl477 477 Neuroblast Hindbrain 99 Atoh1 Cyp11a1 Btbd11 Hsd11b2 Sema7a Fam78b See tissue distribution
Nbl478 478 Neuroblast Hindbrain 132 Atoh1 Gm38534 Btbd11 Hsd11b2 Nkd1 Dbndd2 See tissue distribution
Nbl479 479 Neuroblast Hindbrain glutamatergic 86 Tlx3 Pmaip1 Gm12116 Tmem91 Gxylt2 Sept4 See auto-annotation, tissue distribution
Nbl480 480 Neuroblast Hindbrain 104 Pcsk9 Gm26911 Ucma Mfap4 Man1c1 Gamt See tissue distribution
Nbl481 481 Neuroblast Hindbrain 414 Pcsk9 Focad A930017K11Rik Pde1c Lynx1 Sept4 See tissue distribution
Nbl482 482 Neuroblast Hindbrain 243 Pcsk9 Tbata Ppp2r2c Cog7 Man1c1 Selenom See tissue distribution
Nbl483 483 Neuroblast Hindbrain 414 Cadps2 Pgf Ppp2r2c Pdgfc Man1c1 Selenom See tissue distribution
Nbl484 484 Neuroblast Hindbrain 666 Pvalb Ntf3 Gsg1l Gm5089 Kcne1l Sipa1l3 See tissue distribution
Nbl485 485 Neuroblast Hindbrain 551 Tlx3 Grin2c Gm12116 Sp5 Kcne1l Kcnd3 See tissue distribution
Nbl486 486 Neuroblast Hindbrain 569 Pvalb Fgfr4 Ucma C230057M02Rik Sema7a Sipa1l3 See tissue distribution
Nbl487 487 Neuroblast Hindbrain glutamatergic 118 Pcsk9 Sema3a Sv2b Mxd3 Ppm1h Sgo2a See auto-annotation, tissue distribution
Nbl488 488 Neuroblast Hindbrain glutamatergic 188 Abca4 Gm15723 Barx2 Pax6 Igsf21 Gamt See auto-annotation, tissue distribution
Nbl489 489 Neuroblast Hindbrain 261 Atoh1 Cemip Gsg1l Gm5089 Man1c1 Vat1l See tissue distribution
Nbl490 490 Neuroblast Hindbrain glutamatergic 300 Mybpc1 1810041L15Rik Barx2 Gm5089 Mgarp Vat1l See auto-annotation, tissue distribution
Nbl491 491 Neuroblast Hindbrain glutamatergic 31 Nts Tph1 Barx2 Zfp804b Mgarp Slc24a3 See auto-annotation, tissue distribution
Neur492 492 Neuron Cortical or hippocampal glutamatergic 235 Tac2 Emx1 Stxbp5l Nfix Cntnap4 Cttnbp2 See auto-annotation, tissue distribution; Expresses Prox1
Neur493 493 Neuron Cortical or hippocampal glutamatergic 882 Grp Gm32647 Sln Mctp1 Rnf182 Camk2b See auto-annotation, tissue distribution
Neur494 494 Neuron Cortical or hippocampal glutamatergic 228 Calb2 Kcnip3 Kcnq3 Nfix Prdm8 Nuak1 See auto-annotation, tissue distribution
Neur495 495 Neuron Cortical or hippocampal glutamatergic 150 Prox1 Rerg Col12a1 Kcnk1 Syt2 Neurod1 See auto-annotation, tissue distribution; Expresses Prox1
Neur496 496 Neuron Cortical or hippocampal glutamatergic 469 Tbr1 Vash1 Lrfn5 Ntng2 Prdm8 Jph4 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur497 497 Neuron Cortical or hippocampal glutamatergic 615 Bhlhe22 Gm38604 Slit3 Ntng2 Rprm Hivep2 See tissue distribution, auto-annotation
Neur498 498 Neuron Cortical or hippocampal glutamatergic 484 Bhlhe22 Hdac4 Fam19a2 Gabra2 Zbtb18 Hivep2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur499 499 Neuron Cortical or hippocampal glutamatergic 526 Fam19a1 Adamts3 Fam19a2 Epha3 Epha6 Syn3 See tissue distribution, auto-annotation
Neur500 500 Neuron Cortical or hippocampal glutamatergic 415 Cdh12 Slc24a2 Kcnq3 Elmod1 Efnb2 Rasgef1b See tissue distribution, auto-annotation
Neur501 501 Neuron Cortical or hippocampal glutamatergic 358 Tbr1 Zfp703 Rasgrf1 Nrp2 Pex5l Rasgef1b See tissue distribution, auto-annotation
Neur502 502 Neuron Cortical or hippocampal glutamatergic 693 2600014E21Rik Fam84a Plxna4 Cdh4 Epha5 Plxna2 See tissue distribution, auto-annotation
Neur503 503 Neuron Cortical or hippocampal glutamatergic 368 Sema3c Gm35835 Tbc1d23 Gramd1b Cux2 Osbpl6 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur504 504 Neuron Cortical or hippocampal glutamatergic 1421 Unc5d Nos1 Dpy19l1 Gramd1b Nrp1 Cttnbp2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur505 505 Neuron Cortical or hippocampal glutamatergic 1947 Satb2 Adamts2 Neurod2 Hs6st2 Dok6 Ppfia2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur506 506 Neuron Cortical or hippocampal glutamatergic 519 Cck Slc4a4 Hcn1 Lmo7 Nrp1 Slc16a2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur507 507 Neuron Cortical or hippocampal glutamatergic 573 Tiam2 A330084C13Rik Shb Gabra2 Nrp1 Chrna7 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur508 508 Neuron Cortical or hippocampal glutamatergic 918 Tiam2 Abcc8 Sh3rf3 Cntn2 Fam49a Kcnn2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur509 509 Neuron Cortical or hippocampal glutamatergic 1354 Tiam2 Abcc8 Cabp1 Cntn2 Fam49a Sox5 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur510 510 Neuron Cortical or hippocampal glutamatergic 1240 Fezf2 Dact1 Neurod6 3110039M20Rik Cdh13 Sox5 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur511 511 Neuron Cortical or hippocampal glutamatergic 1111 Sla Abcc8 Neurod6 Ndrg1 Fam49a Hivep2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur512 512 Neuron Cortical or hippocampal glutamatergic 563 Inhba Met Mef2c Syt4 Dok5 Lrfn2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur513 513 Neuron Cortical or hippocampal glutamatergic 638 Inhba Lpl Ccbe1 Arpp21 Glp2r Lrfn2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur514 514 Neuron Cortical or hippocampal glutamatergic 1131 Mlip Ntf3 Ccbe1 Kcnq5 Dok5 Gipr See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur515 515 Neuron Cortical or hippocampal glutamatergic 866 AC129186.1 Nr4a3 Mef2c Arpp21 Itpr1 Mical2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur516 516 Neuron Cortical or hippocampal glutamatergic 2254 Satb2 Ttc9 Ube2ql1 Clstn2 Dok5 Dab1 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur517 517 Neuron Cortical or hippocampal glutamatergic 1230 Satb2 Gm16599 Ccbe1 Clstn2 Jakmip1 Osbpl6 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur518 518 Neuron Cortical or hippocampal glutamatergic 249 6530403H02Rik Chodl Sphkap Lingo2 Epha6 Gm12371 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur519 519 Neuron Cortical or hippocampal glutamatergic 416 Fam19a1 Nrg3os Sphkap Sncb Dlg2 Grin2b See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur520 520 Neuron Cortical or hippocampal glutamatergic 183 Crym Rprml Hcn1 Gabra2 Plppr4 Camk2b See tissue distribution, auto-annotation
Neur521 521 Neuron Cortical or hippocampal glutamatergic 113 Nts Plppr5 Nr4a2 Gm48091 Ryr3 B3gat1 See tissue distribution, auto-annotation
Neur522 522 Neuron Cortical or hippocampal glutamatergic 104 Npy Shisa9 Gm30382 Tmtc1 Ldb2 Gipr See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur523 523 Neuron Cortical or hippocampal glutamatergic 635 Sla Tcerg1l Mef2c Slc6a15 Oma1 B3galt2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur524 524 Neuron Cortical or hippocampal glutamatergic 535 Gm28928 Pde1a Nfe2l3 Ppp1r1b Camkv Kcnab1 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur525 525 Neuron Cortical or hippocampal glutamatergic 2046 Dync1i1 Mc4r Rgs6 Ppp1r1b St3gal1 Hivep2 See tissue distribution, auto-annotation
Neur526 526 Neuron Cortical or hippocampal glutamatergic 302 Gm28928 Htr1f Nfe2l3 Ppp1r1b Ntsr1 Adcy1 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur527 527 Neuron Cortical or hippocampal glutamatergic 45 Il1rapl2 Pde1a Nr4a2 Glra2 Bend6 Lypd6b See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur528 528 Neuron Cortical or hippocampal glutamatergic 21 Adamts18 Nme2 Ppp1r14c Nin Syn2 Hivep2 See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur529 529 Neuron Forebrain GABAergic 11 Syt6 Timm23 Ptprm Bcl11b Grik3 Kcnd3 See auto-annotation, tissue distribution
Neur530 530 Neuron Forebrain GABAergic 389 Gucy1a1 Drd2 Six3 Bcl11b Foxp1 Lrfn2 See auto-annotation, tissue distribution
Neur531 531 Neuron Forebrain GABAergic 209 Gucy1a1 Zfp385b Slit3 Bcl11b Grik3 Lrfn2 See auto-annotation, tissue distribution
Neur532 532 Neuron Forebrain GABAergic 373 B020031H02Rik Hs6st3 Six3 Bcl11b Carmil1 Enox1 See auto-annotation, tissue distribution
Neur533 533 Neuron Forebrain GABAergic 451 B020031H02Rik Angpt1 Gad2 Zfp503 Mpped2 Meis2 See auto-annotation, tissue distribution
Neur534 534 Neuron Forebrain GABAergic 164 B020031H02Rik Fam83d Six3 Mxd3 Aspm Sgo2a See auto-annotation, tissue distribution
Neur535 535 Neuron Forebrain GABAergic 274 Calb2 Sp8 Synpr Brinp1 Kirrel3 Fam124a See auto-annotation, tissue distribution
Neur536 536 Neuron Forebrain GABAergic 396 Dlx6os1 Gm38505 Brinp2 Shtn1 Grik3 Zfp704 See auto-annotation, tissue distribution
Neur537 537 Neuron Forebrain GABAergic 360 Gm45680 Lypd1 Tshz1 Foxp2 Gm27032 Kcnd2 See auto-annotation, tissue distribution
Neur538 538 Neuron Forebrain GABAergic 311 Dlx6os1 Peli2 Vstm2b Gm13889 Il1rapl1 Otud7a See auto-annotation, tissue distribution
Neur539 539 Neuron Forebrain GABAergic 203 Cpne4 Gpr26 Gng4 Ano4 Il1rapl1 Otud7a See auto-annotation, tissue distribution
Neur540 540 Neuron Forebrain GABAergic 278 Sp9 Nkx2-2 Dlx5 Dmrtb1 2510009E07Rik Tmem169 See auto-annotation, tissue distribution
Neur541 541 Neuron Forebrain GABAergic 371 Dlx1as Skida1 Arx Prox1os Fign Tmem169 See auto-annotation, tissue distribution
Neur542 542 Neuron Forebrain GABAergic 365 Dlx6os1 Fgd5 Dlx5 Nrxn3 Slco3a1 Klhdc8b See auto-annotation, tissue distribution
Neur543 543 Neuron Forebrain GABAergic 198 Dlx6os1 Sp8 G630016G05Rik Nrxn3 Grik3 Meis2 See auto-annotation, tissue distribution
Neur544 544 Neuron Forebrain GABAergic 347 Lhx8 Shh Arx Nrxn3 Grik3 Elmo1 See auto-annotation, tissue distribution
Neur545 545 Neuron Forebrain GABAergic 412 Lhx8 Gm14114 Gbx1 Gm17750 Gm45881 Dnm3 See auto-annotation, tissue distribution
Neur546 546 Neuron Forebrain GABAergic 125 Lhx8 Tmem255a Dlx5 Egfem1 Grik3 Kcnh8 See auto-annotation, tissue distribution
Neur547 547 Neuron Forebrain GABAergic 479 Isl1 Gm5532 Six3 Zdhhc2 Ubash3b Xpr1 See auto-annotation, tissue distribution
Neur548 548 Neuron Forebrain GABAergic 236 Gm26883 Pou3f1 Gad2 Cacna2d3 Grik3 Enox1 See auto-annotation, tissue distribution
Neur549 549 Neuron Forebrain GABAergic 878 Isl1 Dlx6 Ebf1 Vstm2a Rgs2 Med12l See auto-annotation, tissue distribution
Neur550 550 Neuron Forebrain GABAergic 344 Gucy1a1 Gpr88 Adora2a Gucy1b1 Gnal Gng7 See auto-annotation, tissue distribution; See MSN auto-annotation
Neur551 551 Neuron Forebrain GABAergic 219 Rxrg Gm44593 Trpc7 Lingo2 Foxp1 Rasgef1b See auto-annotation, tissue distribution; See MSN auto-annotation
Neur552 552 Neuron Forebrain GABAergic 324 Cntnap3 Ikzf1 Cntn5 Lingo2 Ano3 Rasgef1b See auto-annotation, tissue distribution; See MSN auto-annotation
Neur553 553 Neuron Forebrain GABAergic 262 Rarb Rell2 Cntn5 Vstm2a Ano3 Med12l See auto-annotation, tissue distribution; See MSN auto-annotation
Neur554 554 Neuron Forebrain GABAergic 292 Isl1 Dchs2 Zfp804a Bcl11b Sox1 Atxn1 See auto-annotation, tissue distribution; See MSN auto-annotation
Neur555 555 Neuron Forebrain GABAergic 249 Prok2 Cntnap5b Olfm3 Mgat4c Grm7 Lmo4 See auto-annotation, tissue distribution; See MSN auto-annotation
Neur556 556 Neuron Undefined 17 Rxrg C79798 Caln1 B230334C09Rik Gm45881 Lrfn2 Doublets? High doublet score
Neur557 557 Neuron Undefined 122 Mpped1 Mast1 Sh3rf3 Arpp21 Hivep3 Dlgap1 Doublets? High doublet score
Neur558 558 Neuron Forebrain GABAergic 233 Dlx6os1 Prag1 Dlx5 Nrxn3 Zic1 Camk2a See auto-annotation, tissue distribution
Neur559 559 Neuron Forebrain GABAergic 542 Ecel1 Epha4 Dlx5 Nrxn3 Slco3a1 Syt1 See auto-annotation, tissue distribution
Neur560 560 Neuron Forebrain GABAergic 381 Trpc4 Megf11 Dlx5 Zcchc12 Sntg1 Zdhhc14 See auto-annotation, tissue distribution
Neur561 561 Neuron Forebrain GABAergic 318 Trhde 2900055J20Rik Kctd16 Prox1os Cntnap4 Csmd3 See auto-annotation, tissue distribution
Neur562 562 Neuron Forebrain GABAergic 228 Calb1 Lgi1 St18 Erbb4 Olfm2 Pcdh17 See auto-annotation, tissue distribution
Neur563 563 Neuron Forebrain GABAergic 63 Dlx1as Adamts17 Hs3st2 Frmpd3 Olfm2 Camk2a See auto-annotation, tissue distribution
Neur564 564 Neuron Forebrain GABAergic 91 Dlx1as Gm45323 C130073E24Rik Gm45341 Cntnap4 Slc6a1 See auto-annotation, tissue distribution; Expresses Lhx6
Neur565 565 Neuron Forebrain GABAergic 622 Nxph2 Dgkg Gria1 Ptchd4 Gm45881 Dlgap1 See auto-annotation, tissue distribution; Expresses Lhx6
Neur566 566 Neuron Forebrain GABAergic 338 Sst Fam135b Fam222a Sox6 Gm45881 Dlgap1 See auto-annotation, tissue distribution; Expresses Lhx6
Neur567 567 Neuron Forebrain GABAergic 46 Npy Sntg2 Grin3a Nell1 Ptprt Klf5 See auto-annotation, tissue distribution
Neur568 568 Neuron Forebrain GABAergic 1135 Dlx1as Neb Sh3rf3 Maf Cux2 Dlgap1 See auto-annotation, tissue distribution; Expresses Lhx6
Neur569 569 Neuron Forebrain GABAergic 518 Dlx1as Pgm1 Cntnap5c Ackr3 Gria4 Dlgap1 See auto-annotation, tissue distribution; Expresses Lhx6
Neur570 570 Neuron Forebrain GABAergic 464 Lhx6 Ostm1 Arx Erbb4 Rai2 Slc6a1 See auto-annotation, tissue distribution; Expresses Lhx6
Neur571 571 Neuron Forebrain GABAergic 465 Lhx6 Smoc1 Sh3rf3 Sox6 Rai2 Dclk2 See auto-annotation, tissue distribution; Expresses Lhx6
Neur572 572 Neuron Forebrain GABAergic 251 Dlx1as Prokr2 Hs3st2 Erbb4 Gria4 Slc6a1 See auto-annotation, tissue distribution; Expresses Lhx6
Neur573 573 Neuron Forebrain GABAergic 367 Dlx6os1 Htr3a Plcl1 Nrxn3 Nol4 Pdzrn3 See auto-annotation, tissue distribution; Expresses Adarb2
Neur574 574 Neuron Forebrain GABAergic 570 Adarb2 Htr3a Slain1 Erbb4 Bmper Pdzrn3 See auto-annotation, tissue distribution; Expresses Adarb2
Neur575 575 Neuron Forebrain GABAergic 344 Npas1 Gm2516 Nr3c2 Cnr1 Ubash3b Npas3 See auto-annotation, tissue distribution; Expresses Adarb2
Neur576 576 Neuron Midbrain GABAergic 125 Sst Nkd2 Sphkap Zfpm2 Dpf3 Ablim1 See auto-annotation, tissue distribution
Neur577 577 Neuron Midbrain GABAergic 496 Sox14 Lypd1 Gm26688 Lmo1 Dscam Sorcs1 See auto-annotation, tissue distribution
Neur578 578 Neuron Midbrain GABAergic 604 Sox14 Pde1b Scrt1 Sp5 Dscam Kctd1 See auto-annotation, tissue distribution
Neur579 579 Neuron Midbrain GABAergic 514 Sox14 Wnt3 Otx2os1 Otx2 Dscam Mcc See auto-annotation, tissue distribution
Neur580 580 Neuron Midbrain GABAergic 189 Sox14 Adra1b Sphkap Slc35f4 Hdac9 Mcc See auto-annotation, tissue distribution
Neur581 581 Neuron Midbrain GABAergic 374 Col25a1 Tmem260 Tac1 Pdzd2 Trpm3 Mcc See auto-annotation, tissue distribution
Neur582 582 Neuron Midbrain GABAergic 83 Sox14 Adamts5 Rpp25 Ptchd4 Tmeff2 Sorcs1 See auto-annotation, tissue distribution
Neur583 583 Neuron Midbrain GABAergic 140 Sst Igf1 Pnoc Maf Dscam Lrrc4c See auto-annotation, tissue distribution
Neur584 584 Neuron Midbrain GABAergic 277 Npy Lypd1 Pnoc Zfpm2 Dscam Ncald See auto-annotation, tissue distribution
Neur585 585 Neuron Midbrain GABAergic 399 Npy Inpp4b Pnoc Gria3 Kiz Ncald See auto-annotation, tissue distribution
Neur586 586 Neuron Midbrain GABAergic 363 Sox14 Fstl4 Pax7 Cdh22 Dscam Sorcs1 See auto-annotation, tissue distribution
Neur587 587 Neuron Midbrain GABAergic 675 Tfap2b Emx2os Tmem132d Cdh22 Dscam Lrrn3 See auto-annotation, tissue distribution
Neur588 588 Neuron Midbrain GABAergic 567 Fibcd1 Iqsec3 Otx2os1 Lmo1 Irx1 Tenm3 See auto-annotation, tissue distribution
Neur589 589 Neuron Midbrain GABAergic 213 Fibcd1 Cxcl14 Otx2os1 Pdzd2 Fat4 Csmd3 See auto-annotation, tissue distribution
Neur590 590 Neuron Hindbrain glycinergic 274 Tal1 Crb1 St18 Zfpm2 Irx5 Mapk10 See auto-annotation, tissue distribution
Neur591 591 Neuron Midbrain-hindbrain GABAergic 439 Sox14 Pou6f2 Rpp25 Zfpm2 Vstm2l Gabrb2 See auto-annotation, tissue distribution; Expresses Pax5
Neur592 592 Neuron Midbrain GABAergic Midbrain ventral 364 Gata3 Glce Rpp25 Cacna2d3 Dscam Mapk10 See auto-annotation, tissue distribution
Neur593 593 Neuron Midbrain GABAergic 488 Gata3 Gm14114 Lhx1os Ndst3 Rab3c Mapk10 See auto-annotation, tissue distribution
Neur594 594 Neuron Midbrain GABAergic 310 Gm13256 Trbc2 Pnoc Dmrtb1 Vstm2l Ntm See auto-annotation, tissue distribution
Neur595 595 Neuron Midbrain GABAergic 351 Tal1 Pdik1l Rpp25 Gprin3 Dpf3 Oprl1 See auto-annotation, tissue distribution
Neur596 596 Neuron Hindbrain glycinergic 405 Lamp5 Kifc3 Rpp25 Zfpm2 Satb1 Oprl1 See auto-annotation, tissue distribution
Neur597 597 Neuron Hindbrain GABAergic 41 Pkd1l2 Pkd2l1 Gpd1 Gprin3 St6galnac5 Cystm1 See auto-annotation, tissue distribution
Neur598 598 Neuron Hindbrain GABAergic 177 Pax2 2900055J20Rik Slc32a1 Glra2 Igfbp5 Lrp1b See auto-annotation, tissue distribution
Neur599 599 Neuron Hindbrain glycinergic 333 Pax2 Cdh23 Gm26688 Sgcd Igfbp5 Nptx1 See auto-annotation, tissue distribution
Neur600 600 Neuron Hindbrain glycinergic 479 Pax2 Dusp14 Zfp804a Glra2 Prdm8 Sh3gl2 See auto-annotation, tissue distribution
Neur601 601 Neuron Hindbrain glycinergic 341 Slc6a5 Arhgef11 Slc30a3 Crtac1 Rcan2 Dner See auto-annotation, tissue distribution
Neur602 602 Neuron Hindbrain glycinergic 279 Slc6a5 Adcy8 Unc5c Grin1 Dpf3 Lmo4 See auto-annotation, tissue distribution
Neur603 603 Neuron Hindbrain glycinergic 343 Slc6a5 Gm28230 Hoxb4 Hoxb2 Hoxd3 Tmem169 See auto-annotation, tissue distribution
Neur604 604 Neuron Hindbrain glycinergic 131 Lamp5 Gm44593 Hoxb4 Pld5 March4 Cygb See auto-annotation, tissue distribution
Neur605 605 Neuron Hindbrain glycinergic 329 Slc6a5 Gpr45 Hoxb4 Cbfa2t3 March4 Runx1t1 See auto-annotation, tissue distribution
Neur606 606 Neuron Spinal cord glycinergic 304 Hoxb8 4930555F03Rik Hoxb5os Vgll3 Chmp2b Grik2 Expresses Hoxb8; See auto-annotation
Neur607 607 Neuron Spinal cord glycinergic 73 Skor1 Smad3 Hoxb4 Vgll3 Galnt13 C230004F18Rik Expresses Hoxb8; See auto-annotation
Neur608 608 Neuron Hindbrain GABAergic 113 Rxfp3 Etv1 Unc13c Abhd3 Fstl5 Lrrc4c See auto-annotation, tissue distribution
Neur609 609 Neuron Hindbrain GABAergic 273 Skor1 Flrt2 Nxph4 Pld5 Syndig1l Chn2 See auto-annotation, tissue distribution
Neur610 610 Neuron Hindbrain GABAergic 257 Skor2 En1 Gm26688 Ebf3 Fstl5 Gstm7 See auto-annotation, tissue distribution
Neur611 611 Neuron Hindbrain GABAergic 253 Skor2 2700069I18Rik Gm26688 Vstm2a Esrrg Atp1a3 See auto-annotation, tissue distribution
Neur612 612 Neuron Hindbrain glycinergic 373 Crhbp Nxph1 Mab21l2 Cacna2d3 Ica1 Ina See auto-annotation, tissue distribution
Neur613 613 Neuron Hindbrain glycinergic 441 Lamp5 Klhl5 Mab21l2 Cacna2d3 Hoxd3 Tmem169 See auto-annotation, tissue distribution
Neur614 614 Neuron Hindbrain glycinergic 960 Lamp5 Rptor Mab21l2 Ablim3 Nova1 Csmd3 See auto-annotation, tissue distribution
Neur615 615 Neuron Hindbrain GABAergic 118 Otp Fam131c Pax7 9530059O14Rik Esrrg Mast4 See auto-annotation, tissue distribution
Neur616 616 Neuron Hindbrain GABAergic 304 Otp Flrt2 Lhx1os Mtus2 Epha6 Atp1a3 See auto-annotation, tissue distribution
Neur617 617 Neuron Hindbrain glycinergic 374 Otp Gpc5 Lhx1os Lin7a Zfhx4 Mast4 See auto-annotation, tissue distribution
Neur618 618 Neuron Hindbrain GABAergic 216 Otp Nkx1-2 Lhx1os Mtus2 Nrsn2 Rem2 See auto-annotation, tissue distribution
Neur619 619 Neuron Hindbrain GABAergic 353 Hmx2 Prdm16 Gm26688 Mtus2 Lrba Ina See auto-annotation, tissue distribution
Neur620 620 Neuron Hindbrain glycinergic 142 Lamp5 Epha10 Sv2c Cacna2d3 Rcan2 Olfm1 See auto-annotation, tissue distribution
Neur621 621 Neuron Hindbrain glycinergic 750 Pax8 Vps45 Hoxb3 Hoxb2 Plcb4 Tmem169 See auto-annotation, tissue distribution
Neur622 622 Neuron Hindbrain glycinergic 125 Cartpt Irx4 Lhx1os Mtus2 Nebl Ina See auto-annotation, tissue distribution
Neur623 623 Neuron Spinal cord glutamatergic 291 Hoxb6 Dact1 Hoxb4 Lmx1b Tmeff2 Gstm7 Expresses Hoxb8; See auto-annotation
Neur624 624 Neuron Spinal cord glutamatergic 142 Hoxb8 Slit1 Hoxb4 Skap1 Zic1 Snx11 Expresses Hoxb8; See auto-annotation
Neur625 625 Neuron Hindbrain glutamatergic 55 Nrgn Gm32647 Gm2694 Lmx1b March11 Snx11 See auto-annotation, tissue distribution
Neur626 626 Neuron Hindbrain glutamatergic 135 Mafb Cbln1 Bnc2 Maf Pex5l Arg2 See auto-annotation, tissue distribution
Neur627 627 Neuron Hindbrain glutamatergic 85 Lbx1 Vwc2 Kcnip1 Grik1 March11 Phf24 See auto-annotation, tissue distribution
Neur628 628 Neuron Hindbrain glutamatergic 234 Tlx3 Slc10a4 C130021I20Rik Lmx1b Ccdc184 Klhl29 See auto-annotation, tissue distribution
Neur629 629 Neuron Hindbrain glutamatergic 211 4930469K13Rik Hoxc5 Hoxb4 Gm39244 March11 Ptpn5 See auto-annotation, tissue distribution
Neur630 630 Neuron Hindbrain glutamatergic 182 Phox2b Galr1 Pcp4 Lmx1b Galnt13 Garnl3 See auto-annotation, tissue distribution
Neur631 631 Neuron Hindbrain glutamatergic 151 Phox2b Cbln1 Gm2694 Lmx1b Slc17a6 Ina See auto-annotation, tissue distribution
Neur632 632 Neuron Hindbrain glutamatergic 187 Prrxl1 C1ql3 Mab21l2 Mgat4c Nrsn2 Meis1 See auto-annotation, tissue distribution
Neur633 633 Neuron Hindbrain glutamatergic 454 Sncg Cyld Tshz3 Lin7a Nrsn2 Ina See auto-annotation, tissue distribution
Neur634 634 Neuron Hindbrain glutamatergic 392 Hoxb5 Tmem145 Tshz3 Tshz2 Ramp3 Atp1a3 See auto-annotation, tissue distribution
Neur635 635 Neuron Hindbrain glutamatergic 278 Hoxb5 Galnt14 Hoxb4 Hoxb2 Ramp3 Meis1 See auto-annotation, tissue distribution
Neur636 636 Neuron Hindbrain glutamatergic 50 Hmx2 Cbln1 Hoxb4 Lin7a Chsy3 Kcnn1 See auto-annotation, tissue distribution
Neur637 637 Neuron Hindbrain glutamatergic 198 D130009I18Rik Hmx3 Kcnip1 Gm12688 Hoxd3 Kcnh8 See auto-annotation, tissue distribution
Neur638 638 Neuron Hindbrain glutamatergic 110 Lhx3 Nkx6-3 Onecut2 Ngfr Chrna4 Rem2 See auto-annotation, tissue distribution
Neur639 639 Neuron Hindbrain glutamatergic 154 Lhx3 Hoxb3os Mab21l2 Hoxb2 Slc17a6 Olfm1 See auto-annotation, tissue distribution
Neur640 640 Neuron Hindbrain glutamatergic 271 Lhx4 Gm27199 Lhx1os Mtus2 Cacna2d1 Ina See auto-annotation, tissue distribution
Neur641 641 Neuron Hindbrain glutamatergic 98 Nhlh2 Papolg Nefm Thsd7a Celf6 Ina See auto-annotation, tissue distribution
Neur642 642 Neuron Hindbrain glutamatergic 295 C1ql4 Myh7 Chst8 Npnt Epb41l4a Ina See auto-annotation, tissue distribution
Neur643 643 Neuron Hindbrain glutamatergic 112 C1ql4 Prkg1 Nr4a2 Npnt Galnt13 Atp1b1 See auto-annotation, tissue distribution
Neur644 644 Neuron Hindbrain glutamatergic 45 Tcf24 C1ql3 Gm28526 Nog Lrrtm3 Csmd3 See auto-annotation, tissue distribution
Neur645 645 Neuron Hindbrain glutamatergic 145 C1ql4 2900079G21Rik Evx2 3632451O06Rik Rab3b Abtb2 See auto-annotation, tissue distribution
Neur646 646 Neuron Hindbrain glutamatergic 65 C1ql1 Hcrtr2 Prdm6 Ptpre Begain Rgs9 See auto-annotation, tissue distribution
Neur647 647 Neuron Hypothalamus glutamatergic 50 Nkx2-1 Ass1 Nup62cl Tub Chchd10 B630019K06Rik See auto-annotation
Neur648 648 Neuron Hypothalamus glutamatergic 184 Fezf1 Nr0b1 Nup62cl AC118542.1 Chchd10 B630019K06Rik See auto-annotation
Neur649 649 Neuron Hypothalamus glutamatergic 383 Vgll2 Npas4 Nptx2 Gm44644 Tmem179 Pnmal2 See auto-annotation
Neur650 650 Neuron Hindbrain serotoninergic 212 Fev Hmx3 Slc17a8 Cryba2 Gchfr Gch1 See auto-annotation
Neur651 651 Neuron Hindbrain serotoninergic 241 Fev Slc6a4 Tph2 Cryba2 Gchfr Gch1 See auto-annotation
Neur652 652 Neuron Midbrain dopaminergic 220 Th Slc6a3 Aldh1a1 Ddc Chrna6 Prr16 See auto-annotation
Neur653 653 Neuron Midbrain dopaminergic 71 Pitx3 Ret 1700042O10Rik Ddc Snca Gch1 See auto-annotation
Neur654 654 Neuron Midbrain glutamatergic Ventral diencephalon 89 C1ql1 Magel2 Pmfbp1 Foxd2 9130410C08Rik Rem2 See auto-annotation
Neur655 655 Neuron Midbrain glutamatergic 58 Cartpt Postn Nkx6-1 Syt4 Gm26668 Rtl4 See auto-annotation
Neur656 656 Neuron Midbrain glutamatergic Ventral midbrain, diencephalon 37 Cartpt Tmem150c Pmfbp1 Foxd2 9130410C08Rik Parvb See auto-annotation
Neur657 657 Neuron Midbrain glutamatergic Ventral midbrain, diencephalon 126 Sim1 Gm49144 Klhdc8a Gfra1 Pou3f4 Parvb See auto-annotation, tissue distribution
Neur658 658 Neuron Midbrain glutamatergic 142 Sim1 Gjd2 Galnt9 Grin2a Cacna2d1 Nalcn See auto-annotation, tissue distribution
Neur659 659 Neuron Midbrain glutamatergic Diencephalon p3 and otic vesicle 113 Pitx2 Sorcs2 Barhl2 Lmx1b Pou3f4 Lemd1 See auto-annotation, tissue distribution
Neur660 660 Neuron Midbrain glutamatergic 290 Lmx1a Zfp2 Nr4a2 Gm21949 Chgb Elmo1 See auto-annotation, tissue distribution
Neur661 661 Neuron Midbrain glutamatergic 26 Lhx1 Gabra4 Lhx1os Gabra2 Hdac9 Dcun1d4 See auto-annotation, tissue distribution
Neur662 662 Neuron Midbrain glutamatergic 100 Barhl1 Unc5b Adcyap1 Pax6 Hdac9 Gabrg2 See auto-annotation, tissue distribution
Neur663 663 Neuron Hypothalamus 414 Otp Cbln1 Chst8 Crtac1 Slc17a6 Klhl32 Expresses Otp; see auto-annotation, tissue distribution
Neur664 664 Neuron Hypothalamus 179 Otp Tmem255a Galnt9 Kcnh1 Adam23 Arfgef3 Expresses Otp; see auto-annotation, tissue distribution
Neur665 665 Neuron Forebrain glutamatergic 93 Rasgrp1 D930028M14Rik Onecut2 Aifm3 Zdbf2 Klhdc8b See auto-annotation, tissue distribution
Neur666 666 Neuron Cajal-Retzius 194 Samd3 Dnajb5 Fam189a1 Tmem200a Slc17a6 Fam155a See auto-annotation, tissue distribution
Neur667 667 Neuron Forebrain glutamatergic 208 Samd3 Kif26a Uncx Nrp2 Ncam2 Ccser1 See auto-annotation, tissue distribution
Neur668 668 Neuron Forebrain glutamatergic 106 Fezf1 Mir124a-1hg Rspo3 Clvs1 Slc17a6 Dcc See auto-annotation, tissue distribution
Neur669 669 Neuron Forebrain glutamatergic 116 Fezf1 Kcnip3 Uncx Nrn1 Nr2f2 Svip See auto-annotation, tissue distribution
Neur670 670 Neuron Forebrain glutamatergic 541 Tbr1 Tcte2 Tmem163 Epha3 Slc17a6 Ccser1 See auto-annotation, tissue distribution
Neur671 671 Neuron Forebrain glutamatergic 292 Tbr1 Pcdh10 Siah3 Ndst3 Pcdh9 Ccser1 See auto-annotation, tissue distribution
Neur672 672 Neuron Forebrain glutamatergic 479 Tbr1 Gm16351 Nxph4 Dusp4 Sorbs2 Ccser1 See auto-annotation, tissue distribution
Neur673 673 Neuron Forebrain glutamatergic 74 Samd3 Ndp Reln Cnr1 Pex5l Ccser1 See auto-annotation, tissue distribution
Neur674 674 Neuron Cajal-Retzius 167 Trp73 Kcnc1 Reln Cacna2d2 Rcan2 Trp53inp1 See auto-annotation, tissue distribution
Neur675 675 Neuron Cajal-Retzius 121 Trp73 Rap2b Cdkn1a Cacna2d2 Agbl4 Phlda3 See auto-annotation, tissue distribution
Neur676 676 Neuron Cajal-Retzius 140 Ndnf Map1a Gdf5 Fibin Kcnip2 Ankrd35 See auto-annotation, tissue distribution
Neur677 677 Neuron Cajal-Retzius 179 Ndnf Gpr149 Reln Cd274 P2rx5 Cacng5 See auto-annotation, tissue distribution
Neur678 678 Neuron Cajal-Retzius 117 Ndnf Fam159b Reln Cd274 Kcnip2 Ripk4 See auto-annotation, tissue distribution
Neur679 679 Neuron Cajal-Retzius 360 Trp73 Gm48003 Reln Cacna2d2 Gm30648 Slc2a13 See auto-annotation, tissue distribution
Neur680 680 Neuron Forebrain glutamatergic 269 Cck Pappa2 Barhl2 Mab21l1 Pbx3 Meis1 See auto-annotation, tissue distribution
Neur681 681 Neuron Forebrain glutamatergic 453 Gm13404 Tfap2c Barhl2 Vcan Sel1l3 Kcnh8 See auto-annotation, tissue distribution
Neur682 682 Neuron Forebrain glutamatergic 125 Rasgrp1 Pde2a Tmem163 Tmem200a Sel1l3 Kcnh8 See auto-annotation, tissue distribution
Neur683 683 Neuron Forebrain glutamatergic 95 Samd3 Fcho1 Cntn4 Foxp2 Pbx3 Cacna1e See auto-annotation, tissue distribution
Neur684 684 Neuron Forebrain glutamatergic 227 Samd3 Plpp4 Tenm1 Rftn1 Chl1 Ccser1 See auto-annotation, tissue distribution
Neur685 685 Neuron Forebrain glutamatergic 91 Grm1 Gpr149 Tmem158 Kcnf1 Chl1 Lrfn2 See auto-annotation, tissue distribution
Neur686 686 Neuron Cajal-Retzius 128 Trp73 Fst Reln 5330417C22Rik Ajap1 Pls1 See auto-annotation, tissue distribution
Neur687 687 Neuron Cajal-Retzius 35 Calb2 Rflna Gabrg3 Grm2 Dsp Pls1 See auto-annotation, tissue distribution
Neur688 688 Neuron Forebrain glutamatergic 67 Nts Cdhr1 Atp6ap1l Sncb Fgf9 Slc4a10 See auto-annotation, tissue distribution
Neur689 689 Neuron Forebrain glutamatergic 205 Nts Cnih3 Tfap2e Sorcs3 Deptor Brca1 See auto-annotation, tissue distribution
Neur690 690 Neuron Forebrain glutamatergic 116 Nts Gm28175 Tfap2e Sorcs3 Nebl Brca1 See auto-annotation, tissue distribution
Neur691 691 Neuron Hypothalamus 14 Gnrh1 Gng8 Acbd7 Gfy Kiss1r S100z See tissue distribution; expresses Gnrh; belongs to clade 691- 698
Neur692 692 Neuron Hypothalamus 26 Ghrh Scgn Esr1 Pnlip Gpr179 Rnf138rt1 See tissue distribution; expresses Ghrh; belongs to clade 691- 698
Neur693 693 Neuron Hypothalamus 94 Pomc Tbx3os1 Kcnk12 Zim1 Rnf128 Vat1l See tissue distribution; expresses Pomc; belongs to clade 691- 698
Neur694 694 Neuron Hypothalamus 250 Otp Calcr Cited1 Baiap3 Rrad Gck See tissue distribution; expresses Otp; belongs to clade 691- 698
Neur695 695 Neuron Hypothalamus 2067 Hmx2 Magel2 Hap1 Gm44644 Nap1l5 Efcab1 See tissue distribution; belongs to clade 691- 698
Neur696 696 Neuron Hypothalamus 80 Dio3 Rit2 Resp18 Gpr176 Faim2 Efcab1 See tissue distribution; belongs to clade 691- 698
Neur697 697 Neuron Hypothalamus 140 Six6 Npas4 Scg2 Rasgrf2 Pde7b Rasd1 See tissue distribution; belongs to clade 691- 698
Neur698 698 Neuron Hypothalamus 119 Avp Gal Kcnip4 Kcnh1 Ptprn Myrip See tissue distribution; belongs to clade 691- 698
Neur699 699 Neuron Spinal cord glutamatergic 74 Prrxl1 Mafa Casz1 Lmx1b Ajap1 Cpne5 Expresses Hoxb8; See auto-annotation
Neur700 700 Neuron Spinal cord glutamatergic 178 Hoxb8 Pde11a Necab1 Spock3 Ankfn1 Cpne5 Expresses Hoxb8; See auto-annotation
Neur701 701 Neuron Spinal cord glutamatergic 139 Hoxb8 Prss12 Necab1 Spock3 Dpyd Nyap2 Expresses Hoxb8; See auto-annotation
Neur702 702 Neuron Midbrain glutamatergic 269 Barhl1 Mgll Rorb Dpp10 Ak8 Car11 See auto-annotation, tissue distribution
Neur703 703 Neuron Midbrain glutamatergic 942 Bhlhe23 Pou6f1 Lmo3 Mab21l1 Nova1 Nkain3 See auto-annotation, tissue distribution
Neur704 704 Neuron Midbrain glutamatergic 306 C1ql2 Esrrb Rgs6 Sgcz Nova1 Ntm See auto-annotation, tissue distribution
Neur705 705 Neuron Midbrain glutamatergic 697 Pou4f2 Galnt14 Pou4f1 Mab21l1 Sybu Csmd3 See auto-annotation, tissue distribution
Neur706 706 Neuron Midbrain glutamatergic 1932 Car10 Pou3f2 Chd5 Sgcz Nova1 Csmd3 See auto-annotation, tissue distribution
Neur707 707 Neuron Midbrain glutamatergic 680 Tfap2b Gabra1 Lgals7 Syt4 Ptprt Car11 See auto-annotation, tissue distribution
Neur708 708 Neuron Midbrain glutamatergic 386 Tfap2b Foxb1 Olfm3 Ntng2 Pcsk2 Socs2 See auto-annotation, tissue distribution
Neur709 709 Neuron Midbrain glutamatergic 641 Sst Gm28905 Tac1 Gm20754 Ldb2 Gabrb2 See auto-annotation, tissue distribution
Neur710 710 Neuron Midbrain glutamatergic 418 Ndst4 Cxcl14 Cntn4 Gm20754 Lrrtm4 Gabrb2 See auto-annotation, tissue distribution
Neur711 711 Neuron Midbrain glutamatergic 1476 Ndst4 Rarres1 Cntn4 Negr1 Zfhx3 Gabrb2 See auto-annotation, tissue distribution
Neur712 712 Neuron Midbrain glutamatergic 669 Tfap2d Spats2l Cntn4 Sorcs3 Lrrtm3 Gabrb2 See auto-annotation, tissue distribution
Neur713 713 Neuron Midbrain glutamatergic 423 Wif1 Hs3st4 Tcf7l2 A330102I10Rik Ephb1 Runx1t1 See auto-annotation, tissue distribution
Neur714 714 Neuron Midbrain glutamatergic 891 Ndst4 Cfap77 Pdzrn4 Id4 Irx1 St8sia1 See auto-annotation, tissue distribution
Neur715 715 Neuron Forebrain glutamatergic 395 Syt13 Prokr2 Samd5 Chst1 Rnf220 Tmem132a See auto-annotation, tissue distribution
Neur716 716 Neuron Forebrain glutamatergic 463 Syt13 Lrp4 Gm9844 Chst1 Rnf220 Mast4 See auto-annotation, tissue distribution
Neur717 717 Neuron Forebrain glutamatergic 149 Syt13 Cacng3 A230006K03Rik Gabrb1 Astn2 Cacna1e See auto-annotation, tissue distribution
Neur718 718 Neuron Forebrain glutamatergic 291 Calb2 Mylk Ntng1 Id4 St6galnac5 Ncald See auto-annotation, tissue distribution
Neur719 719 Neuron Forebrain glutamatergic 166 Calb2 Fgf15 Zic4 Chst1 Rab3b Ncald See auto-annotation, tissue distribution
Neur720 720 Neuron Forebrain glutamatergic 270 Fam19a1 Igfbp7 Cbln2 Adamts19 Ankfn1 Ncald See auto-annotation, tissue distribution
Neur721 721 Neuron Forebrain glutamatergic 402 Tesc Hdac11 Camk2n1 Adamts19 March1 Ncald See auto-annotation, tissue distribution
Neur722 722 Neuron Forebrain glutamatergic 347 Syt13 Grk3 Alk Cntn6 Nptxr Cacna1e See auto-annotation, tissue distribution
Neur723 723 Neuron Forebrain glutamatergic 637 Kitl Trbc2 Ntng1 Prox1os Nptxr Gm8773 See auto-annotation, tissue distribution
Neur724 724 Neuron Forebrain glutamatergic 174 Vgf Klhl26 Ntng1 1500035N22Rik Cgref1 Rab40b See auto-annotation, tissue distribution
Neur725 725 Neuron Forebrain glutamatergic 190 Slc18a2 5033430I15Rik Ntng1 Grb14 Camk4 Adcy1 See auto-annotation, tissue distribution
Neur726 726 Neuron Mixed region 12 Sncg Gm45846 Tmem151a Atp6v1g2 Nrsn2 Dmtn See auto-annotation, tissue distribution
Neur727 727 Neuron Mixed region glutamatergic 28 Nmb Ctxn2 Fxyd7 Tmem91 Faim2 Lin7b See auto-annotation, tissue distribution
Neur728 728 Neuron Mixed region and neurotransmitter 145 Sst Golga7b Fxyd7 Maf Hpca Lingo1 See auto-annotation, tissue distribution
Neur729 729 Neuron Mixed region and neurotransmitter 108 Sst Ctxn2 Scg2 Sncb Ckmt1 Syngr3 See auto-annotation, tissue distribution
Neur730 730 Neuron Mixed region and neurotransmitter 1093 Vsnl1 Kifc2 Fxyd7 Sncb Ckmt1 Lin7b See auto-annotation, tissue distribution
Neur731 731 Neuron Mixed region and neurotransmitter 1947 Snhg11 Slc12a5 Asic1 Sncb Ckmt1 Fabp3 See auto-annotation, tissue distribution
Neur732 732 Neuron Mixed region glutamatergic 2268 B230209E15Rik Gm2516 Tac1 Sncb Faim2 Ablim2 See auto-annotation, tissue distribution
Neur733 733 Neuron Mixed region glutamatergic 814 Pitx2 Ctxn2 Scg2 Zcchc12 1700001L19Rik Nexmif See auto-annotation, tissue distribution
Neur734 734 Neuron Mixed region glutamatergic 219 Calb2 Lrrc75b AW551984 Caly Pak6 Cyb561 See auto-annotation, tissue distribution
Neur735 735 Neuron Mixed region GABAergic 1080 Gata3 Brinp3 Rpp25 Sgcz Dscam Csmd3 See auto-annotation, tissue distribution
Neur736 736 Neuron Mixed region GABAergic 561 B230209E15Rik Asic4 A230006K03Rik Zfp804b Cgref1 Gm16083 See auto-annotation, tissue distribution
Neur737 737 Neuron Mixed region GABAergic 2437 Snhg11 Gm15398 Ripor2 Nell1 Lrrtm4 Csmd3 See auto-annotation, tissue distribution
Neur738 738 Neuron Mixed region GABAergic 965 B230209E15Rik 2610008E11Rik Gabrg3 Gm44644 Faim2 A730017C20Rik See auto-annotation, tissue distribution
Neur739 739 Neuron Mixed region GABAergic 892 Ecel1 Cdh18 Dlx5 Tmem130 Tmem179 Csmd3 See auto-annotation, tissue distribution
Neur740 740 Neuron Mixed region GABAergic 752 AI593442 Gm42303 Kcnmb2 Zbtb7c Ubash3b Gabra3 See auto-annotation, tissue distribution
Neur741 741 Neuron Forebrain glutamatergic 34 Pmch Cntnap5b Fam46a Dmrtb1 Lrrtm4 Wdpcp See auto-annotation, tissue distribution
Neur742 742 Neuron Forebrain glutamatergic 154 Nts Cdh23 Gm43824 Vwc2l Cntn3 Cntnap2 See auto-annotation, tissue distribution
Neur743 743 Neuron Mixed region glutamatergic 104 Pitx2 Thsd7b Foxa1 Gm21949 Plcxd3 Susd4 See auto-annotation, tissue distribution
Neur744 744 Neuron Forebrain glutamatergic 1032 B230323A14Rik Brinp3 Pcp4 Spock1 Cacna2d1 Ehbp1l1 See auto-annotation, tissue distribution
Neur745 745 Neuron Forebrain glutamatergic 296 Nppa Myo5b Kctd16 Nrsn1 Grm7 Rnf138rt1 See auto-annotation, tissue distribution
Neur746 746 Neuron Forebrain GABAergic 153 Lhx8 Kcnc2 Gbx1 Kctd8 Lrrtm4 Gabrb2 See auto-annotation, tissue distribution
Neur747 747 Neuron Forebrain GABAergic 185 Lhx6 Avpr1a Gbx1 Vstm2a Gpr158 Lypd6b See auto-annotation, tissue distribution
Neur748 748 Neuron Forebrain GABAergic 29 Syt10 Lgr5 Unc13c Ryr2 Unc80 Eef1a2 See auto-annotation, tissue distribution
Neur749 749 Neuron Mixed region GABAergic 63 Cbln4 Cxcl14 Opcml Slc35f4 Satb1 Kcnab1 See auto-annotation, tissue distribution
Neur750 750 Neuron Mixed region glutamatergic 296 Chrm3 Clec16a Reln Ebf3 Dpf3 Kcnh7 See auto-annotation, tissue distribution
Neur751 751 Neuron Forebrain glutamatergic 314 Pitx2 Gm45768 Pdzrn4 Gm21949 Chgb Prkcb See auto-annotation, tissue distribution
Neur752 752 Neuron Mixed region glutamatergic 12 Calb2 Scn1a Gm20642 Dmxl2 March11 Oprl1 See auto-annotation, tissue distribution
Neur753 753 Neuron Forebrain glutamatergic 215 Samd3 Gm45846 Ap1s2 Tmem200a Pcdh15 Tceal6 See auto-annotation, tissue distribution
Neur754 754 Neuron Forebrain glutamatergic 172 Samd3 Ak5 Fam189a1 Gm21949 Fgf12 Nrg3 See auto-annotation, tissue distribution
Neur755 755 Neuron Hindbrain glycinergic 144 Hoxb5 Galr1 Neto1 Ebf3 Esrrg Emc9 See auto-annotation, tissue distribution
Neur756 756 Neuron Hindbrain glycinergic 539 Hoxb5 Arhgap15 Hoxb4 Sncb Dusp26 Atp1b1 See auto-annotation, tissue distribution; might include some spinal cord
Neur757 757 Neuron Spinal cord glycinergic 368 Serpinb1b Hoxb7 Grm5 Grm3 Ramp3 Adcy1 Expresses Hoxb8
Neur758 758 Neuron Spinal cord glycinergic 205 Hoxb8 Shisa8 Hoxb5os Prkcq Kcnip2 Nyap2 Expresses Hoxb8
Neur759 759 Neuron Hindbrain glutamatergic 266 Hoxc4 Optn Neto1 Sncb Rnf152 Mdga2 See auto-annotation, tissue distribution
Neur760 760 Neuron Hindbrain glutamatergic 658 Cntnap5a L3mbtl4 Gabrg1 Slc5a7 Rnf152 Lmo4 See auto-annotation, tissue distribution
Neur761 761 Neuron Hindbrain glutamatergic 214 Cntnap5a Nrde2 Irx2 Glis1 Dpf3 Lmo4 See auto-annotation, tissue distribution
Neur762 762 Neuron Cerebellum GABAergic 111 Car8 Amigo2 Rgs4 Spock3 Ptchd1 Fam184b Expresses Pcp2, Car8, Calb1: Purkinje markers (mousebrain.org)
Neur763 763 Neuron Cerebellum GABAergic 213 Pcp2 Ptprr Arhgef33 Grik1 Rora Fam184b Expresses Pcp2, Car8, Calb1: Purkinje markers (mousebrain.org)
Neur764 764 Neuron Cerebellum GABAergic 130 Cdh9 9630028H03Rik Arhgef33 Cpne9 Grm7 Lrrc4c Expresses Pcp2, Car8, Calb1: Purkinje markers (mousebrain.org)
Neur765 765 Neuron Cerebellum GABAergic 253 Fgf3 Slc1a6 Arhgef33 Vstm2a Gm26793 Coch Expresses Pcp2, Car8, Calb1: Purkinje markers (mousebrain.org)
Neur766 766 Neuron Cerebellum GABAergic 243 Car8 BC030500 Tmem132d Lrrc3b Vstm2l Lrrc4c Expresses Car8, Calb1, some Pcp2: Purkinje markers (mousebrain.org)
Neur767 767 Neuron Posterior hindbrain glutamatergic 261 D130009I18Rik Gabra5 Pou4f1 Gm12688 Npy1r Gm8773 Expresses Hoxb4, Hoxb5, Hoxd3 and medulla neuron HBGLU1 markers
Neur768 768 Neuron Motor neuron 103 Prph Gm14697 Gm2990 Slc5a7 Tspan17 Dkkl1 See CrMN auto-annotation
Neur769 769 Neuron Motor neuron 198 Sncg Cep170b Gm2990 Chat Tspan17 Nyap2 See CrMN auto-annotation
Neur770 770 Neuron Undefined 203 Sncg B3gat2 Onecut2 Arhgdig Tspan17 Cend1 No strong markers on heatmap
Neur771 771 Neuron Dorsal midbrain glutamatergic 144 Sncg Zbtb8a Gm28526 Klhl1 Stk32c Vwa5b2 Expresses Tfap2b (http://developingmouse.brain-map.org/experiment/show/100057423), Lhx2 and Lhx9 (https://doi.org/10.1016/S0925-4773(98)00233-0)
Neur772 772 Neuron Dorsal midbrain glutamatergic 47 Pou4f3 Gfra2 Lgals7 Penk Ache Fkbp1b Expresses Tfap2b (http://developingmouse.brain-map.org/experiment/show/100057423) and Isl1; Also see @PMid auto-annotation
Neur773 773 Neuron Sensory neuron 87 Prph Calca Ppp1r1c Plekhd1 Stac Rxfp2 See PSN auto-annotation
Neur774 774 Neuron Sensory neuron 120 Prph Gfra3 Ppp1r1c Scn10a Scn7a Ntrk1 Nociceptor sensory (trigeminal or DRG) based on auto-annotation and Hmx1: https://doi.org/10.1186/1471-213X-9-27
Neur775 775 Neuron Sensory neuron 81 Pvalb Pirt P2rx3 Uts2b Gm43376 Kazald1 See PSN auto-annotation
Neur776 776 Neuron Cerebellum glutamatergic 72 Gm42397 Kcnj12 Osbp2 Necab3 Me1 Ppfia2 Same clade as 782
Neur777 777 Neuron Cerebellum glutamatergic 250 Gm42397 Chrm2 Hcn1 Svep1 Cplx2 Ppfia2 Same clade as 782
Neur778 778 Neuron Cerebellum glutamatergic 611 Cadps2 Fat2 Rasgef1c Ndst3 Pcsk5 Sorcs1 Same clade as 782
Neur779 779 Neuron Cerebellum glutamatergic 829 Kcnj6 Gm15577 Ucma Tmem91 Ppm1h Palm2 Same clade as 782; see auto-annotation
Neur780 780 Neuron Cerebellum glutamatergic 329 Galnt15 Trpc3 Medag Patj Hdac9 Rassf8 Same clade as 782; see auto-annotation
Neur781 781 Neuron Cerebellum glutamatergic 234 Lmx1a Diras2 Tll1 Frmpd4 Ppm1h Ror1 Same clade as 782; see auto-annotation
Neur782 782 Neuron Cerebellum glutamatergic 128 Calb2 Cbln1 Gm2694 Frmpd4 Cntnap4 Trpc5 Expresses Lmx1a and Eomes, suggesting unipolar brush cell
Neur783 783 Neuron Epithalamus glutamatergic 59 Nwd2 Islr2 Gm28526 Kctd8 Pcsk2 Parvb See habenula, epithalamus auto-annotation
Neur784 784 Neuron Epithalamus glutamatergic 114 Nwd2 Fam196b Kcng4 Aifm3 Cntnap4 Slc2a13 See habenula, epithalamus auto-annotation
Neur785 785 Neuron Epithalamus glutamatergic 118 Nwd2 Elfn1 Kcng4 Mcub Fam19a4 Gpr139 See habenula, epithalamus auto-annotation
Neur786 786 Neuron Epithalamus glutamatergic 103 Nwd2 Akain1 Necab2 Kctd8 Rab27b Sytl2 See habenula, epithalamus auto-annotation
Neur787 787 Neuron Epithalamus glutamatergic 145 Nwd2 Vwc2 Necab2 Mgat4c Kcnma1 Qpct See habenula, epithalamus auto-annotation
Neur788 788 Neuron Epithalamus glutamatergic 223 Gpr151 Htr5b Necab2 Kctd8 Kcnma1 Nek7 See habenula, epithalamus auto-annotation
Neur789 789 Neuron Epithalamus glutamatergic 175 Nwd2 Gm5741 Necab2 Syt9 Kcnma1 Gabbr2 See habenula, epithalamus auto-annotation
Neur790 790 Neuron Epithalamus glutamatergic 261 Nwd2 Nxph3 Pou4f1 Kctd8 Kcnma1 Tmem117 See habenula, epithalamus auto-annotation
Neur791 791 Neuron Epithalamus glutamatergic 175 Tesc Cryzl1 Pou4f1 Vav3 Irx1 Pcca See habenula, epithalamus auto-annotation
Neur792 792 Neuron Diencephalon glutamatergic 293 Tesc Neurod4 Rspo3 Clybl Zic2 Pcca See tissue distribution and auto-annotation
Neur793 793 Neuron Diencephalon glutamatergic 143 Cartpt Cd1d1 Synpr Pax6 Rmst Cntn1 See tissue distribution and auto-annotation
Neur794 794 Neuron Diencephalon glutamatergic 63 Calb2 Fras1 C130073E24Rik Zfp804b Rab3b Retreg1 See tssue distribution and auto-annotation
Neur795 795 Neuron Diencephalon glutamatergic 57 Nts Bsx C130073E24Rik Klhl1 Zfp365 Retreg1 See tissue distribution and auto-annotation
Neur796 796 Neuron Diencephalon glutamatergic 29 Col8a1 Tph1 Gnb3 Gm44196 Sag Crx See tissue distribution and auto-annotation
Neur797 797 Neuron Pituitary neuroendocrine 12 Cga Tshb Apoc3 Vegfd Tshr Hlf Expresses Pitx1, Cga