Serotonergic neurons, hindbrain
Properties
| Index | 78 |
| Symbol | HBSER1 |
| Cells | 105 |
| Region | Pons |
| Likely location | Ventral midbrain/isthmic dorsal raphe (B7), caudal linear nucleus (B8), medial lemniscus (B9), isthmic periaqueductal grey (B4?) |
| Developmental compartment | Rhombencephalon |
| Neurotransmitters | VGLUT3Ser |
| Marker genes | Slc6a4 Wfdc12 Slc18a2 |
| Comments | Remaining heterogeneity for Nitric oxide |
| Taxon | Neurons CNS neurons Cholinergic, monoaminergic and peptidergic neurons Cholinergic and monoaminergic neurons |
Enriched genes
Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.
| Score | Gene | Description |
| 4681.1 | Slc6a4 | Sodium-dependent serotonin transporter |
| 3199.0 | Gchfr | GTP cyclohydrolase 1 feedback regulatory protein |
| 2782.0 | Tph2 | Tryptophan 5-hydroxylase 2 |
| 1518.2 | En1 | Homeobox protein engrailed-1 |
| 1377.8 | Slc18a2 | Synaptic vesicular amine transporter |
Heatmap and tSNE plot
| Click for heatmap in loom viewer | tSNE in loom viewer |
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Spatial distribution
Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.
