Serotonergic neurons, hindbrain


Likely locationVentral midbrain/isthmic dorsal raphe (B7), caudal linear nucleus (B8), medial lemniscus (B9), isthmic periaqueductal grey (B4?)
Developmental compartmentRhombencephalon
Marker genes Slc6a4 Wfdc12 Slc18a2
CommentsRemaining heterogeneity for Nitric oxide
Taxon Neurons
CNS neurons
Cholinergic, monoaminergic and peptidergic neurons
Cholinergic and monoaminergic neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
4681.1 Slc6a4 Sodium-dependent serotonin transporter
3199.0 Gchfr GTP cyclohydrolase 1 feedback regulatory protein
2782.0 Tph2 Tryptophan 5-hydroxylase 2
1518.2 En1 Homeobox protein engrailed-1
1377.8 Slc18a2 Synaptic vesicular amine transporter

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
Preview not available. Click for full-size image.

Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.