Serotonergic neurons, hindbrain


Likely locationNucleus raphe medulla (pallidus, oscurus, magnus, B1-3)
Developmental compartmentRhombencephalon
Marker genes Trh Pgr15l Slc18a2
CommentsRemaining heterogeneity for Acetylcholine
Taxon Neurons
CNS neurons
Cholinergic, monoaminergic and peptidergic neurons
Cholinergic and monoaminergic neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
2923.8 Trh Pro-thyrotropin-releasing hormone Thyrotropin-releasing hormone
2783.4 Pgr15l
2219.6 Irs4 Insulin receptor substrate 4
2093.9 Tph2 Tryptophan 5-hydroxylase 2
1879.4 Dlk1 delta like non-canonical Notch ligand 1

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.