Serotonergic neurons, hindbrain


Likely locationNucleus raphe pons (pallidus, oscurus, magnus, B1-3)
Developmental compartmentRhombencephalon
Marker genes Tph2 5031425F14Rik Slc18a2
Taxon Neurons
CNS neurons
Cholinergic, monoaminergic and peptidergic neurons
Cholinergic and monoaminergic neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
4831.3 Tph2 Tryptophan 5-hydroxylase 2
4313.0 Slc6a4 Sodium-dependent serotonin transporter
3511.6 Slc18a2 Synaptic vesicular amine transporter
3218.6 Dlk1 delta like non-canonical Notch ligand 1
2810.5 Gchfr GTP cyclohydrolase 1 feedback regulatory protein

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
Preview not available. Click for full-size image.

Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.