Glutamatergic projection neurons of the raphe nucleus


RegionMidbrain dorsal
Likely locationDorsal raphe nucleus
Developmental compartmentMesencephalon
Marker genes Cartpt Ucn Chodl
CommentsRemaining heterogeneity for Acetylcholine
Taxon Neurons
CNS neurons
Cholinergic, monoaminergic and peptidergic neurons
Cholinergic and monoaminergic neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
11002.2 Cartpt Cocaine- and amphetamine-regulated transcript protein CART(1-52) CART(55-102) CART(62-102)
8151.6 Ucn urocortin
1730.2 Dlk1 delta like non-canonical Notch ligand 1
664.3 Gabrq Gamma-aminobutyric acid receptor subunit theta
530.0 Chodl Chondrolectin

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.