Cholinergic interneurons, telencephalon


RegionStriatum dorsal, Striatum ventral,Amygdala
Likely locationStriatum,Amygdala
Developmental compartmentTelencephalon
Marker genes Slc5a7 Slc17a8 Chat
CommentsRemaining heterogeneity for GABA, Nitric oxide
Taxon Neurons
CNS neurons
Cholinergic, monoaminergic and peptidergic neurons
Cholinergic and monoaminergic neurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
1631.9 Slc5a7 High affinity choline transporter 1
1535.2 Ecel1 Endothelin-converting enzyme-like 1
1409.8 Lhx8 LIM/homeobox protein Lhx8
1170.2 Tacr1 tachykinin receptor 1
1052.5 Chat choline O-acetyltransferase

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
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Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.