R-LM border Cck interneurons, cortex/hippocampus


Likely locationHippocampus (sr/slm),Cortex
Developmental compartmentTelencephalon
Marker genes Col19a1 Slc17a8
CommentsRemaining heterogeneity for VGLUT3
Taxon Neurons
CNS neurons
Telencephalon interneurons
Telencephalon inhibitory interneurons

Enriched genes

Table shows genes that are highly enriched (but not necessarily unique) in this cluster, relative to all other clusters.

Score Gene Description
711.4 Col19a1 Collagen alpha-1(XIX) chain
572.1 Cnr1 Mus musculus cannabinoid receptor 1 (brain) (Cnr1), transcript variant 2, mRNA.
545.4 Adarb2 adenosine deaminase, RNA-specific, B2
508.5 Npas1 Neuronal PAS domain-containing protein 1
492.2 Yjefn3 YjeF N-terminal domain containing 3

Heatmap and tSNE plot

Click for heatmap in loom viewer tSNE in loom viewer
Preview not available. Click for full-size image.

Spatial distribution

Images show the correlation of gene expression for this cluster with each voxel in the Allen Mouse Brain Atlas. Click on the image for a high-resolution version.